PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000483G0230
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 611aa    MW: 66139.6 Da    PI: 5.7447
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000483G0230genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.48e-0654691126
                     GTS--TTTTT-SS-SS CS
          zf-CCCH 11 rtGtCkyGdrCkFaHg 26
                     ++G+C+ G++C++ H+
  PH01000483G0230 54 KMGFCPNGPNCRYKHV 69
                     56*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.0895171IPR000571Zinc finger, CCCH-type
PfamPF041464.4E-35185338IPR007275YTH domain
PROSITE profilePS5088245.3185339IPR007275YTH domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:1900363Biological Processregulation of mRNA polyadenylation
GO:2000031Biological Processregulation of salicylic acid mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003723Molecular FunctionRNA binding
GO:0004521Molecular Functionendoribonuclease activity
GO:0005516Molecular Functioncalmodulin binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MEDGDGGLSF DFEGGLDPAP ATGGLAPSSA DAGAGGGGGG GAAAGGGATD RRYKMGFCPN  60
GPNCRYKHVK LPGPPPPVEE VIQKILQMRS FNKYNQHRNN NYSQQGERHQ PPQGSGLPNQ  120
NSTENATAAI VQPTAGQQAQ TMNQQPPQQQ QQQQKPNTND QVQGVSNGLP NQAARIATPL  180
PQGPSRYFIV KSCNRENLEI SVQQGIWATQ RSNEAKLNEA FESTENVILI FSINRTRHFQ  240
GCAKMTSRIG GYIGGGNWKS AHGTAHYGRN FSMQWLKWWL TIDLSSCFLF CMENFMIMSS  300
ISVKTHHLRN PYNDNLPVKI SRDCQELEPF IGEQLASLLY LEPDSELTAM LVAAEAKREE  360
EKAKGVCADE ATDNQDIVLY EDNEEEEEEE SEEEEEENNG QESQGRGRGR GTMWPPQMPM  420
LRGVGPMIGG RGFPPNMMGD GFGFGGGFGM PDPFGVPRGF PPFGGPRFPG DFSRGGPLPG  480
MVFPGRPPQP GGLFPMCLEM MMVPGRGPLM GGMGMGGPGR PKRPIGMAPF MPPPPPPNSR  540
AAKREQRRPG GDRNDRYETT SDQGSKGHDT TGNSGADGTK SQSGDRYNGG AFRDDSESDE  600
EAAPRRSRKR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zuu_A9e-95171366317930-kDa cleavage and polyadenylation specificity factor 30
5zuu_B9e-95171366317930-kDa cleavage and polyadenylation specificity factor 30
5zuu_C9e-95171366317930-kDa cleavage and polyadenylation specificity factor 30
5zuu_D9e-95171366317930-kDa cleavage and polyadenylation specificity factor 30
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000483G0230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657248.20.0PREDICTED: zinc finger CCCH domain-containing protein 45
SwissprotQ0DA500.0C3H45_ORYSJ; Zinc finger CCCH domain-containing protein 45
TrEMBLJ3MGU60.0J3MGU6_ORYBR; Uncharacterized protein
STRINGOB06G32400.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59892428