PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000462G0520
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 470aa    MW: 51153.4 Da    PI: 7.9156
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000462G0520genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.5e-12192236347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+++++ + + lG+g+W+ I+r     Rt+ q+ s+ qky
  PH01000462G0520 192 AWSEEEHKRFLLGLNNLGKGDWRGISRNYVVSRTPTQVASHAQKY 236
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF827044.84E-590117IPR002775DNA/RNA-binding protein Alba-like
PfamPF019185.6E-590116IPR002775DNA/RNA-binding protein Alba-like
Gene3DG3DSA:3.30.110.201.6E-591116IPR002775DNA/RNA-binding protein Alba-like
PROSITE profilePS5129417.273185241IPR017930Myb domain
SuperFamilySSF466891.87E-15186242IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-17188240IPR006447Myb domain, plants
SMARTSM007172.3E-8189239IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-8191235IPR009057Homeodomain-like
PfamPF002496.4E-10192236IPR001005SANT/Myb domain
CDDcd001673.50E-7192237No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MASYCCFWRP RWPMDVERVQ MVTWDPLISI QDMLRILVRP EVGSVVIEGI GGSGKTWAAK  60
AAYQIARTSN LFAHQCPVTA PKSADTPPAD NRSNEIVIKA MGRMINTTIA IVELLKPSNY  120
SPCFVDFNYI AKKGIGYVFP WLFGVRISDK LIRKSASMGN LAQLAEGSGG ARDEGYGSEG  180
NDDKRQRKRG EAWSEEEHKR FLLGLNNLGK GDWRGISRNY VVSRTPTQVA SHAQKYFIRQ  240
TNMQRRKRRS SLFDMVIDDS ADQPLSCTSS QEVEEHLEDP QPVTGPEAQP APGPVLASVS  300
VPPVPVMEPP APVPVLTSAS APPPVPAMAP QLEEKESVAF SSNAGEAGIV MPEVIPHHGY  360
PMMLPPPYYP SAFVPVPYYG YVPFFYGPPS TVQAPHEVVK PVATHSKPPV NVEDLYSMSE  420
LSLKGDSDTN SVAPKLPLAP KPIGRPDRQS AFHGKGPADG SSNGLIPAK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182188DKRQRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000462G0520
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573373.11e-144transcription factor MYBS3
TrEMBLF2D2N31e-143F2D2N3_HORVV; Predicted protein
STRINGMLOC_55748.11e-144(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129002629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-46MYB_related family protein