 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PH01000456G0310 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
| Family |
HSF |
| Protein Properties |
Length: 150aa MW: 16797.6 Da PI: 4.6247 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PH01000456G0310 | genome | ICBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 80.1 | 3.5e-25 | 13 | 73 | 2 | 62 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTE CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgF 62
Fl+k+y++++d+ +++++sw e++++fvv+ + efa ++Lp+yFkh+nf+SFvRQLn+Y+
PH01000456G0310 13 FLTKTYQLVDDPCTDHVVSWGEDETTFVVWRPPEFAMDLLPNYFKHNNFSSFVRQLNTYNH 73
9**********************************************************85 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 150 aa
Download sequence Send
to blast |
MESSHAKPVP APFLTKTYQL VDDPCTDHVV SWGEDETTFV VWRPPEFAMD LLPNYFKHNN 60
FSSFVRQLNT YNHVEPVPPP TPTPPASCRL VELGPAERGA SPRPRQRGDD TAVKLFGVRL 120
NEGKKRRVQL EEEEGDGDHD DDDQGSDQV*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5d5u_B | 2e-15 | 9 | 72 | 26 | 88 | Heat shock factor protein 1 |
| 5d5v_B | 2e-15 | 9 | 72 | 26 | 88 | Heat shock factor protein 1 |
| 5d5v_D | 2e-15 | 9 | 72 | 26 | 88 | Heat shock factor protein 1 |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK063952 | 1e-68 | AK063952.1 Oryza sativa Japonica Group cDNA clone:001-123-F07, full insert sequence. |
| GenBank | AK099354 | 1e-68 | AK099354.1 Oryza sativa Japonica Group cDNA clone:J033042P04, full insert sequence. |
| GenBank | AP004671 | 1e-68 | AP004671.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0524G08. |
| GenBank | AP005292 | 1e-68 | AP005292.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1340_C08. |
| GenBank | AP014963 | 1e-68 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
| GenBank | AY344494 | 1e-68 | AY344494.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF12 mRNA, complete cds. |
| GenBank | CP012615 | 1e-68 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
