PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000440G0880
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 681aa    MW: 72871.1 Da    PI: 7.5168
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000440G0880genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012167186120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      y+C++Cg+ Fs++    rH 
  PH01000440G0880 167 YVCSHCGEGFSQWWGVCRHC 186
                      9**************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR018742.4E-36169193No hitNo description
PROSITE profilePS5016216.549234436IPR020588DNA recombination and repair protein RecA-like, ATP-binding domain
SuperFamilySSF525401.47E-34244351IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3002.7E-37247353IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF134811.1E-10250350No hitNo description
SMARTSM003823.7E-6255462IPR003593AAA+ ATPase domain
SuperFamilySSF525401.47E-34406506IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3002.7E-37407493IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR018742.4E-36431459No hitNo description
PRINTSPR018742.4E-36466492No hitNo description
SuperFamilySSF542115.31E-31473487IPR020568Ribosomal protein S5 domain 2-type fold
Gene3DG3DSA:3.30.230.108.0E-28514676IPR014721Ribosomal protein S5 domain 2-type fold, subgroup
SuperFamilySSF542115.31E-31524676IPR020568Ribosomal protein S5 domain 2-type fold
PRINTSPR018742.4E-36541564No hitNo description
PfamPF135416.9E-10557648No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
GO:0008094Molecular FunctionDNA-dependent ATPase activity
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MLPSPSSLRS LLHLSRRLHF HRLRAPNPRL PSPPLLAHLR LLSSSSSSPS GGAGWAAYDP  60
LTDSLTPSAA ISSTSSSSSA ASDPETPADS DVWGVFDPVA GRIVMQGQPY PPPPPSSNSE  120
EEKESVEEKE VIREKGKSSG GKGQAKWSAV AAARKVGGKA AKEKVSYVCS HCGEGFSQWW  180
GVCRHCQAMG TLAKYVAEGS HDHAVRSWIP QKSKEMMPQS LQEVTKGFDQ AEWRITLPGS  240
FGMEIARVLG GGIVPGSLVL VGGDPGVGKS SLLLQLASVV SEGFKVEDSS PVVYVSGEES  300
IAQIGNRADR MSIKSRNLYL YSSTDIEDIL DKIQPLSPRA VIVDSIQTVY LRAFAGSAGN  360
TMQLDLIALT IHAGFIIFFV VMLRSTLLPL ACTFSSPAPC ALLAFAMVIK AVKECTSALL  420
RFAKLTNIPV FLIGHVTKTG DIAGPRLLEH IVDVVLYMEG ERCSSHRLLR SVKNRFGSTD  480
ELGVFEMSEH GLQAVLNPSE MFLTEHDSDS EILAGLAVAV ILDGSRTFAI EVQALCVSGS  540
PRNGQVVGIP TSRADVIISV LMKQAGLKLD DNAIFLNVVS GFKLTETAGD LAIAASICSS  600
FLEFPIPNDI AFIGEVGLGG ELRTVPRMDK RVMAIAKLGY KKCVVPKTSE KLLKPLNLDI  660
EILPCSNLKQ VINTIFRPQG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lkm_A1e-1011616762452DNA repair protein RadA
5lkm_B1e-1011616762452DNA repair protein RadA
5lkm_C1e-1011616762452DNA repair protein RadA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000440G0880
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2879950.0AK287995.1 Oryza sativa Japonica Group cDNA, clone: J075101C16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561328.10.0uncharacterized protein LOC100824150 isoform X1
TrEMBLI1H2X20.0I1H2X2_BRADI; Uncharacterized protein
STRINGBRADI1G54900.10.0(Brachypodium distachyon)