PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

HD-ZIP

Protein Properties

Length: 255aa MW: 28112.9 Da PI: 8.0139

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000434G0400	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.5	4.7e-18	105	159	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Le+ F+++++++ +++ LA++l+L rqV vWFqNrRa+ k PH01000434G0400 105 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALARQLNLRPRQVEVWFQNRRARTK 159 78889************************************************98 PP
2	HD-ZIP_I/II	123.9	7.6e-40	105	193	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq++lLE+ F+e+++L+p++Kv+lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL++e ++Lr + PH01000434G0400 105 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCFETLTEENRRLHRELQQLR-A 193 69*************************************************************************************9.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.3E-18	94	160	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.55E-19	97	162	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.103	101	161	IPR001356	Homeobox domain
SMART	SM00389	2.5E-15	103	165	IPR001356	Homeobox domain
CDD	cd00086	1.04E-15	105	162	No hit	No description
Pfam	PF00046	1.9E-15	105	159	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	136	159	IPR017970	Homeobox, conserved site
Pfam	PF02183	2.4E-10	161	194	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	4.6E-20	161	204	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MEETIAYIPR QLCMAQEEVG LALGLSLGSG HHQPKEQPPS QPCAVEPSLT LSLPADNGLT 60 APGRPLIAAV KRELRAEDDE EAAERALYSA ASPAAADDDE GCNSRKKLRL TKEQSALLED 120 RFKEHSTLNP KQKVALARQL NLRPRQVEVW FQNRRARTKL KQTEVDCELL KRCFETLTEE 180 NRRLHRELQQ LRALNHPHPA GFFMSQLPAA TLSICPSCER VAGPPPAAAD RPTKAAGPGR 240 AAHFQFSPFT NSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	109	SRKKLRL
2	153	161	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000434G0400

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP098984	0.0	FP098984.1 Phyllostachys edulis cDNA clone: bphylf047o12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983488.1	1e-121	homeobox-leucine zipper protein HOX15
Swissprot	Q7G737	6e-85	HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15
TrEMBL	K4AE82	1e-120	K4AE82_SETIT; Uncharacterized protein
STRING	Pavir.Ib02193.1.p	1e-121	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2055	36	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	9e-61	HD-ZIP family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]