PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000433G0890
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 337aa    MW: 36728.6 Da    PI: 7.2985
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000433G0890genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.64.4e-3167120255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      prlrWtpeLH +Fv+av++LGG+++AtPk +l+lm+v gL++ hvkSHLQ+YR+
  PH01000433G0890  67 PRLRWTPELHLCFVRAVDRLGGQDRATPKLVLQLMNVRGLSIGHVKSHLQMYRS 120
                      9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.78263123IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2963121IPR009057Homeodomain-like
SuperFamilySSF466891.97E-1564122IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-2366122IPR006447Myb domain, plants
PfamPF002496.0E-968119IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MESSKGFEIS TGLPSGGEAD EDADDGGAPN DGSSASNNST VEEEAGDSRR TGASSSSVRP  60
YVRSKNPRLR WTPELHLCFV RAVDRLGGQD RATPKLVLQL MNVRGLSIGH VKSHLQMYRS  120
KQIDDSGQVI GGPWRDHHLQ DGGQLNNLGQ LSLRHALHHR QSGAGTILSR FGTAWPPWGC  180
HGHHFLGSKP YHSAAEAEAF LRTRAQYVAR ASSNPALIQS WSSRNDNIMN HQRRLLQATV  240
CNNEDDNHGP LDLDLSLHIG PRREKRKRGC SWGKENGDHI DGDEEVESTA TRLCLSLFSA  300
PPPRMSTTSS AADTLDVNVD KEKAHATRAS TLDLTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-1868122357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-1868122357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-1868122357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-1868122357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000433G0890
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0936680.0FP093668.1 Phyllostachys edulis cDNA clone: bphyem204i06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798662.11e-109putative Myb family transcription factor At1g14600
TrEMBLA0A1E5VA201e-110A0A1E5VA20_9POAL; Uncharacterized protein
STRINGSb05g000480.11e-109(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44083671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.12e-38G2-like family protein