PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PH01000425G0160

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

C2H2

Protein Properties

Length: 469aa MW: 49518.6 Da PI: 9.8504

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000425G0160	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	234	256	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ Cg+ F ++ L+ H + H PH01000425G0160 234 SCHRCGEQFGKWDALEAHHLSkH 256 7*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	235	256	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	4.7E-23	258	467	No hit	No description
Gene3D	G3DSA:3.90.228.10	8.0E-10	282	439	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MGERRRRASA VAGGGGRGSE EETKVAAPAP APTVWFALKR SLHCRSAPSE VHVPRPKAGA 60 VAGAGGGGHL SAIVTKRAAR SGCSRSIANI RDVIHGSKRH PERPPSCSPR SIGSSEFLNP 120 IAHEVVLSTN SRCELKITGF GGLAAGGVLA HEAEGHGGIV SSFVGTLRPG TPGPGWSHGL 180 QYNGSCRSVR CTPPRSPNVL LDRDGPPAGV AAGHRASCEV DAVKSGGKSS GGLSCHRCGE 240 QFGKWDALEA HHLSKHAVTE LVEGDSSRKI VEIICRTSLL KSESSCVRIE RVFKVHNTQR 300 TMSRFEEYRE VVKLKASKLP KKHPRCLADG NELLRFHGVT LTCALGAAGG SGPSICTSHK 360 CAVCRIIRYG FSAKEGKAGV GVFTTSTSGR AFESIETYDD DPATRKALLV CRVIAGRVHK 420 PLDNLKELIG QTGFDSLAGK VGPYSNIEEL YLLNPRALLP CFVVICKP*

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MGERRRRASA VAGGGGRGSE EETKVAAPAP APTVWFALKR SLHCRSAPSE VHVPRPKAGA  60
VAGAGGGGHL SAIVTKRAAR SGCSRSIANI RDVIHGSKRH PERPPSCSPR SIGSSEFLNP  120
IAHEVVLSTN SRCELKITGF GGLAAGGVLA HEAEGHGGIV SSFVGTLRPG TPGPGWSHGL  180
QYNGSCRSVR CTPPRSPNVL LDRDGPPAGV AAGHRASCEV DAVKSGGKSS GGLSCHRCGE  240
QFGKWDALEA HHLSKHAVTE LVEGDSSRKI VEIICRTSLL KSESSCVRIE RVFKVHNTQR  300
TMSRFEEYRE VVKLKASKLP KKHPRCLADG NELLRFHGVT LTCALGAAGG SGPSICTSHK  360
CAVCRIIRYG FSAKEGKAGV GVFTTSTSGR AFESIETYDD DPATRKALLV CRVIAGRVHK  420
PLDNLKELIG QTGFDSLAGK VGPYSNIEEL YLLNPRALLP CFVVICKP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000425G0160

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635096.1	0.0	uncharacterized protein LOC4327046
TrEMBL	Q8LQM0	0.0	Q8LQM0_ORYSJ; Os01g0785900 protein
STRING	OS01T0785900-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3277	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-151	C2H2 family protein