PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000397G0940
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 487aa    MW: 52190.9 Da    PI: 7.6929
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000397G0940genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.31e-16279324555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hne Er+RRdriN+++++L++l+P++      K +Ka++L ++++Y+k+Lq
  PH01000397G0940 279 HNESERKRRDRINQKMQTLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 324
                      *************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.898274323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-20277347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-14279324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.05E-18279328No hitNo description
Gene3DG3DSA:4.10.280.103.0E-18279336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-18280329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MNQCVPSCWD LEDPVGAASI NPASAGAHRV VSGTGAFTPG IVPMSDQYYE VAELTWEKGN  60
ISSHGLLLNR PVPMYPPASS HLQVVGSSGG TLEAVVGEAA ARSAHLAQPV PVPAPLLGMG  120
VAGVARAPVD ALVPCARDEA EGEARRNKRA RVLGEDGRVC ASQGSAAPGR GESTLLTLEA  180
CGTGADDACW FTTTTNNSTS LEREDKGSPE TENTSIGGGA SDSRCFSRRS QASSAYILFT  240
YSMSRSDEMC DEGDNVVVNG EAAMRSSIST KRSRAAAIHN ESERKRRDRI NQKMQTLQKL  300
VPNSSKTDKA SMLDEVIDYL KQLQAQVQVM SRMSSMMMPM AMPQLQMSVM ANMAQMAQMA  360
QMGLGMMNMA PLAQPGYAGL TPPTNMMHPP PFVPMSWDAA SAAADRPQQP AGSAVPDAFS  420
AFLACQAAQQ NAQRRVKLTN WRKSVQQQQQ QQQPNSMEAY NRMVALYQKL NQQQQQSQPS  480
NSKQRA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282287ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000397G0940
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164230.11e-165transcription factor UNE10 isoform X1
RefseqXP_020164233.11e-165transcription factor UNE10 isoform X2
TrEMBLA0A452YUB81e-169A0A452YUB8_AEGTS; Uncharacterized protein
STRINGOPUNC10G16560.11e-167(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74743140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-37bHLH family protein