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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000369G0400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | GRAS | ||||||||
Protein Properties | Length: 719aa MW: 79021.3 Da PI: 5.4372 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 348.2 | 1.3e-106 | 335 | 709 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL++cA+av+++d + a +lL++++++a p+gd+ qRla++++e+L+arl++++s+ + ++ +++++ ++ l+a++l+ + + k+s PH01000369G0400 335 LRTLLIHCAQAVATDDRRSAMELLKQIKQHALPRGDAAQRLAHCLAEGLQARLVGTGSTGSLVHESLMAKRTSAVDILQAYQLYMAAICFKKVS 428 6789***************************************************65555544455555556699******************* PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 ++ N++I++a g++++HiiD++i++G+QWp++l++++ R++gpp++RiTg++ p++g ++++eetg+rL+++A+e++vpf++++++a ++ PH01000369G0400 429 FIFSNHTIYNASLGKKKIHIIDYGIQYGFQWPCFLKKISGREGGPPEVRITGIDLPQPGfrPTQRIEETGRRLSNYAREFDVPFKYHAIAAAKM 522 **********************************************************9******************************999** PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 e+++ e+L+++p+E+l+Vn++ q ++l+desv ++s+rd vL+ +++++P+ ++++ + + +++ F++rf eal yysa+fd l+++ prese PH01000369G0400 523 ESVRKEDLNIDPDEVLIVNCQCQFKNLMDESVVIDSPRDIVLNNIRKMQPHAFIHAIVNGSFSAPFFVTRFREALFYYSAMFDILDTTTPRESE 616 ********************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +r+ +E+ ++gr++ nv+aceg++r+er et+++W+ r ++aG+k++pl+ ++++ ++ +++++ + + ++ ++++l++gWk+r L+++S W PH01000369G0400 617 QRMLIEQNIFGRSALNVIACEGTDRVERPETYKQWQVRNQRAGLKQLPLNPDIVQVVRDKVKRCYHKDFVIDVDHQWLLQGWKGRILYAISTW 709 *****************************************************************889************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 61.797 | 309 | 690 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.5E-104 | 335 | 709 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 719 aa Download sequence Send to blast |
MGSSSHLPAV PGAGDDADPS LFFYLSDLTP ASPSAYLDLP PTPHQEQPGG GSPSSSATED 60 LVLPFISRML MEEDIDDKFF YDYPDHPALL QAQQPFLDIL SDPSSQSNSS DSNSNNNHLS 120 PSDASVSTAA AVNSYDPARF TSIDPDPAAF FGGGANSDFM SSAFLKGMEE ANKFLPSEDK 180 LVIDLEASSG EFLRGVEEAK KFLPSEDKLL IGFNGVSAPA AAPAALVSVK KEAVDAVVVA 240 AAGGGRGRKN PYDDEELELE GGRSSKQTAV QGDDVAAQDM FHEVMMPTQE MCVLQMQNLR 300 LAMEKEAASN EASGGGKGGN GKARGRRGGK DVVDLRTLLI HCAQAVATDD RRSAMELLKQ 360 IKQHALPRGD AAQRLAHCLA EGLQARLVGT GSTGSLVHES LMAKRTSAVD ILQAYQLYMA 420 AICFKKVSFI FSNHTIYNAS LGKKKIHIID YGIQYGFQWP CFLKKISGRE GGPPEVRITG 480 IDLPQPGFRP TQRIEETGRR LSNYAREFDV PFKYHAIAAA KMESVRKEDL NIDPDEVLIV 540 NCQCQFKNLM DESVVIDSPR DIVLNNIRKM QPHAFIHAIV NGSFSAPFFV TRFREALFYY 600 SAMFDILDTT TPRESEQRML IEQNIFGRSA LNVIACEGTD RVERPETYKQ WQVRNQRAGL 660 KQLPLNPDIV QVVRDKVKRC YHKDFVIDVD HQWLLQGWKG RILYAISTWV ANDASSYF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-41 | 339 | 709 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000369G0400 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003579265.1 | 0.0 | scarecrow-like protein 34 | ||||
TrEMBL | A0A0E0MNV8 | 0.0 | A0A0E0MNV8_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC12G15050.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-156 | GRAS family protein |