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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000357G1080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | LBD | ||||||||
Protein Properties | Length: 242aa MW: 24987.5 Da PI: 8.276 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 144.2 | 3.9e-45 | 28 | 127 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrrkC ++Cv+apyfp e+p+kfanvhk+FGasnv+kll++lp+++reda+ssl+yeAear++dPvyG+vg i+ lq+q+++l++el PH01000357G1080 28 PCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELPPHQREDAVSSLAYEAEARVKDPVYGCVGAISVLQRQVHRLQKEL 121 7********************************************************************************************* PP DUF260 95 allkee 100 +++++e PH01000357G1080 122 DAAHAE 127 *99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.834 | 27 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-44 | 28 | 125 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MASSSSTSNS AVSPVIAGAA TTPGAGSPCA ACKFLRRKCL PGCVFAPYFP PEEPQKFANV 60 HKVFGASNVT KLLNELPPHQ REDAVSSLAY EAEARVKDPV YGCVGAISVL QRQVHRLQKE 120 LDAAHAELLR YACGEVGIPT ALPVTAAPRL AAAMPAPGQF AAASAGMRRL GVVDGIVPPP 180 RPPTGCYYMR NNAGSVGADV APVLPYASMA NWTVNAISTT TTTSGSESIG MDRKEGGDSS 240 M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-86 | 19 | 147 | 2 | 131 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-86 | 19 | 147 | 2 | 131 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00581 | DAP | Transfer from AT5G63090 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000357G1080 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ951639 | 0.0 | JQ951639.1 Loudetia sp. MCE-2012 Ramosa2 (ra2) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006643800.1 | 1e-146 | PREDICTED: protein LATERAL ORGAN BOUNDARIES-like isoform X2 | ||||
Refseq | XP_006643801.2 | 1e-146 | PREDICTED: protein LATERAL ORGAN BOUNDARIES-like isoform X1 | ||||
Refseq | XP_015698431.1 | 1e-146 | PREDICTED: protein LATERAL ORGAN BOUNDARIES-like isoform X1 | ||||
TrEMBL | J3KWR6 | 1e-145 | J3KWR6_ORYBR; Uncharacterized protein | ||||
STRING | OB01G14220.1 | 1e-146 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8813 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.4 | 3e-62 | LBD family protein |