PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bHLH

Protein Properties

Length: 305aa MW: 32875.5 Da PI: 7.4438

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000355G1080	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.7e-12	108	159	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +rr+h ++Er+RR+++N+ ++ Lr+++P++ ++++ + a+ + A++++k+L+ PH01000355G1080 108 QRRNHIAVERNRRRQMNEYLAVLRSVMPPS---YAQRGDQASLVAGAINFVKELE 159 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.06E-17	106	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.52E-12	106	163	No hit	No description
PROSITE profile	PS50888	15.059	107	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.6E-10	108	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-13	108	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.9E-9	113	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MRAPSLDCGI DIDELEEKGG VLLQEEAGAM MLGAGATTWV DAAACACSIA SGAVEEYWDE 60 KHYPVSPPPP VVPPTPAASG HGKAAAAAAR RRRRRPKAVK NKEEMENQRR NHIAVERNRR 120 RQMNEYLAVL RSVMPPSYAQ RGDQASLVAG AINFVKELEQ LLQSLEAQKR RAPCSQPAPV 180 PFARFFAFPQ YSAGAGASDN ASSGNGEGGC GARRGVADIE VVMAESHANV KVLAPRRPRQ 240 LLRMVVALQC LGLTVLHLNV TTTVDHLVLY SFSLKIEDEC RLSSVDEIAA AVHQMVAQIA 300 EDCVG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	94	RRRRRR
2	109	119	RNHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000355G1080

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP094552	0.0	FP094552.1 Phyllostachys edulis cDNA clone: bphylf024j19, full insert sequence.
GenBank	FP098739	0.0	FP098739.1 Phyllostachys edulis cDNA clone: bphyst010j12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623907.1	1e-138	transcription factor bHLH94
Swissprot	Q9C7T4	1e-69	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A0E0K5G2	1e-145	A0A0E0K5G2_ORYPU; Uncharacterized protein
STRING	OPUNC02G30580.1	1e-145	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10462	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	4e-43	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]