PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000353G0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | C2H2 | ||||||||
Protein Properties | Length: 195aa MW: 21778.9 Da PI: 10.1747 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.7 | 2.6e-07 | 33 | 55 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg+ F r nL+ H r+H PH01000353G0020 33 YVCEICGQGFQREQNLQMHRRRH 55 9*********************9 PP | |||||||
2 | zf-C2H2 | 12.2 | 0.00056 | 127 | 149 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k + +s++k H++t+ PH01000353G0020 127 WVCARCAKGYAVQSDYKAHLKTC 149 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.17E-7 | 32 | 55 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.9E-6 | 32 | 55 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 6.5E-4 | 33 | 55 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.759 | 33 | 55 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12874 | 0.024 | 33 | 51 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 35 | 55 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 91 | 121 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 0.001 | 118 | 148 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.17E-7 | 122 | 147 | No hit | No description |
SMART | SM00355 | 270 | 127 | 154 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MTDMYVRMCM WYLDPDAEVV ALSPRTLLES DRYVCEICGQ GFQREQNLQM HRRRHKVPWQ 60 LVKRAAGGED GGTGGGNGGG GGAAGARKRV FVCPEPSCLH HDPAHALGDL VGIKKHFRRK 120 HGGRRQWVCA RCAKGYAVQS DYKAHLKTCG TRGHSCDCGR VFSRLQKGKE KRKKERENEK 180 QRVLAYDHFG GGLR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-13 | 123 | 164 | 3 | 44 | Zinc finger protein JACKDAW |
5b3h_F | 2e-13 | 123 | 164 | 3 | 44 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. | |||||
UniProt | Transcription factor regulating lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD14 in directing leaf and floral organ morphogenesis (PubMed:24039602). Acts cooperatively with IDD15 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:24039602}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000353G0020 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134229 | 1e-164 | AC134229.2 Oryza sativa Japonica Group chromosome 3 clone OJ1081D05, complete sequence. | |||
GenBank | AK376150 | 1e-164 | AK376150.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3116F03. | |||
GenBank | AP014959 | 1e-164 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 1e-164 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795974.1 | 9e-90 | protein indeterminate-domain 16-like | ||||
Swissprot | F4IPE3 | 4e-82 | IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5 | ||||
Swissprot | Q9FRH4 | 1e-82 | IDD16_ARATH; Protein indeterminate-domain 16 | ||||
TrEMBL | A0A446SA04 | 4e-92 | A0A446SA04_TRITD; Uncharacterized protein | ||||
STRING | Traes_4BL_DB9678C4C.2 | 7e-93 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1051 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25250.1 | 1e-72 | indeterminate(ID)-domain 16 |
Publications ? help Back to Top | |||
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