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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000348G0830 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bHLH | ||||||||
Protein Properties | Length: 234aa MW: 25625 Da PI: 8.0608 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.8 | 4.5e-09 | 70 | 117 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRdr+N++f+eL ++ + + +K +K++iL A + + +L PH01000348G0830 70 TKACREKLRRDRLNERFNELCAVMEPG---KPPKADKVAILSDAARLLGQL 117 5678**********************9...99************9988777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-11 | 58 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.376 | 66 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-6 | 70 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.09E-6 | 70 | 122 | No hit | No description |
SMART | SM00353 | 3.2E-6 | 72 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-9 | 73 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MSCGGQNGWL LDYGLVEEEI QGSDFIYMVD DPAVNSVILG FDVPRREDGG QDNAGSKKRS 60 RPESSAPPGT KACREKLRRD RLNERFNELC AVMEPGKPPK ADKVAILSDA ARLLGQLRAE 120 AQKLNKSNES LQDSIKSLKA EKSELRDEKT RLKAERERLE QMLKGVSAAA APTPFIPHPA 180 AATAAPSFHP AAFAQTGKFV PFTTSYPPSA AFWQWIPPTS LDTSKDPVHW PPVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000348G0830 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP100980 | 0.0 | FP100980.1 Phyllostachys edulis cDNA clone: bphyem120e16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003568328.1 | 1e-141 | transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 4e-58 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | I1HIU6 | 1e-140 | I1HIU6_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G23520.1 | 1e-141 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9386 | 31 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 4e-54 | bHLH family protein |