PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000339G0990
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 679aa    MW: 75136.3 Da    PI: 6.001
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000339G0990genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.1e-084385347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT +E+e + +a +q G++ +++I  +++  +   q++++++ +
  PH01000339G0990 43 AWTRQEEESFFNALRQVGKN-FEKITLRVQ-SKNKDQVRHYYYRL 85
                     6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.12E-93589IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-53888IPR009057Homeodomain-like
PROSITE profilePS5129312.5823990IPR017884SANT domain
SMARTSM007179.0E-64088IPR001005SANT/Myb domain
PfamPF002496.0E-64385IPR001005SANT/Myb domain
CDDcd001671.34E-54386No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MEKEAREEMS PPPQSVDLLV TTPLSASDPN LKPAKKPTRQ WAAWTRQEEE SFFNALRQVG  60
KNFEKITLRV QSKNKDQVRH YYYRLVRRMK KLLGPEFSLD AKNSKDTIAA MLRWWSLLEK  120
FSCSASKLHL KPRRFKTFVE ALGNQLLKDR KKTRRKCPQG DMYLSSPSPI LSKTQGNESF  180
SVEFLSVDAQ NGSKVASSKG TFFKRVAEPN SNKSGAIKGD LSATRTVKQK RRAGGVVASA  240
AYKKWERAAM AGVSLVADAA EELERNTVNL NLLCNIDART LTSSSNDVST VDGIGTNHIK  300
EIDPQAPAKL KLQLFPINEA TRKALEKGEH NPHLELALSS RKKISSVLEH LNRKWGNSNI  360
AFGELVLFPY YAHQEDLATY QRWTTRDTVA VADVFLSVNA PSVFRLRYGW FSLAELEAGV  420
SEISLTHFEN CMIPEDIQAD LGMNCAALSE GEWADTLTDI SVGFLLTEAS KGANSDCLGT  480
SVVKNALFLE NPCSYDSFDA AVALHASRYQ AAEQPARTSH STVWDAEETC DEFSFNLASA  540
RKQEGSNTSA SSSPDSDNEV HSLNSEGFKG FLQDLAGGDV ADNSCIDDAK DIEALCAKSP  600
HQNDNDFELK DQSLADISWP DSLGPLDMET PSVRYQADDL LLGDSQNSWN RIMANSLDAF  660
RNLPFFAVDK NDSIPSII*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000339G0990
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796639.10.0TSL-kinase interacting protein 1 isoform X2
SwissprotQ8LJT81e-132TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A2S3ISI10.0A0A2S3ISI1_9POAL; Uncharacterized protein
STRINGSb01g047840.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54783643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.31e-156TSL-kinase interacting protein 1