PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000333G0160
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HSF
Protein Properties Length: 248aa    MW: 26774.6 Da    PI: 8.9497
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000333G0160genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.43.9e-32251162102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      F+ k++++++d++++ +++w   gn+f+vld+  f++ +Lp+yFkh+nfaSFvRQLn YgF+kv+ ++         weF+h+sF +g+ +ll 
  PH01000333G0160  25 FVAKTFHMVSDPATDAIVRWGGAGNTFLVLDPAAFSDFLLPSYFKHRNFASFVRQLNSYGFRKVDPDR---------WEFAHESFLRGQAQLLP 109
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                       i rkk+
  PH01000333G0160 110 LIVRKKK 116
                      ****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-3421108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.5E-4821114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-3122114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.9E-2825114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-172548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-176375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-177688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGSECKGHEF QAAGGGGGQG AIVPFVAKTF HMVSDPATDA IVRWGGAGNT FLVLDPAAFS  60
DFLLPSYFKH RNFASFVRQL NSYGFRKVDP DRWEFAHESF LRGQAQLLPL IVRKKKAGAA  120
GRELCEEGEE VRGTIQAVQR LRDEQRGMDQ ELQTMNCRLR AAENRPGQMM AFLAKLADEP  180
GVVLRAMLAK EEELAAAGKG CAPGKKRRIG AEAGRGDRGA MAGADVAELA QGRAVPFPFS  240
VLGQVFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-26711411129Heat shock factor protein 1
5d5v_B1e-26711411129Heat shock factor protein 1
5d5v_D1e-26711411129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000333G0160
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0663160.0AK066316.1 Oryza sativa Japonica Group cDNA clone:J013066G03, full insert sequence.
GenBankAY3444930.0AY344493.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633152.11e-139heat stress transcription factor C-1b
SwissprotQ942D61e-140HFC1B_ORYSJ; Heat stress transcription factor C-1b
TrEMBLA0A0E0JNN01e-139A0A0E0JNN0_ORYPU; Uncharacterized protein
STRINGOPUNC01G29770.11e-140(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112983141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-62heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Schmidt R, et al.
    Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica.
    AoB Plants, 2012. 2012: p. pls011
    [PMID:22616023]