PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000331G1100
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 318aa    MW: 35890.7 Da    PI: 6.6293
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000331G1100genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.33.8e-50241512128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkev 92 
                       pGfrFhPtdeelv++yL++kv+gk+l++ e+ike+diyk+ePwd+p +++ ++ekewyfF+ r +ky+++ r+nr  at sg+Wkatg d+++
  PH01000331G1100  24 LPGFRFHPTDEELVTFYLRRKVAGKRLSI-EIIKEMDIYKHEPWDFPkASTVGGEKEWYFFCLRGRKYRNSIRPNRvtATGSGFWKATGIDRPI 116
                      69***************************.89***************445556889********************555669************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +s  g  +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  PH01000331G1100 117 YS-AGDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 151
                      **.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100554.18323180IPR003441NAC domain
SuperFamilySSF1019411.44E-5423180IPR003441NAC domain
PfamPF023651.1E-2425151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MKSDQGEVVE EVIVGDEEKE DLVLPGFRFH PTDEELVTFY LRRKVAGKRL SIEIIKEMDI  60
YKHEPWDFPK ASTVGGEKEW YFFCLRGRKY RNSIRPNRVT ATGSGFWKAT GIDRPIYSAG  120
DCIGLKKSLV YYRGSAGKGT KTDWMMHEFR LPPHPENAVD STPPSLQEAE VWTICRIFKR  180
NITYKKQPQQ VAGKVAVAAV AQPDSSWITG SPESDCTGDE HMNFLPQAPV NNVNNGYNQQ  240
FQGQWNRVPQ PSPAMPMAAF HQSVLSPAMP NDLYKDGCWD DIGRMVMELT DPNFRAAGHY  300
IASKAADKLE TDMWGYV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-50161868174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000331G1100
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0932770.0FP093277.1 Phyllostachys edulis cDNA clone: bphyem202p21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803594.11e-143transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK551e-80NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A3L6T4I21e-145A0A3L6T4I2_PANMI; Transcription factor JUNGBRUNNEN 1-like
STRINGSi030477m1e-131(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.14e-80NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]