PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000329G0340
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 360aa    MW: 40238 Da    PI: 8.7867
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000329G0340genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00111232323
                     ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                     C++C+k F++  +L  H+++H
  PH01000329G0340 12 CNKCNKKFPSGRSLGGHMSRH 32
                     *******************99 PP
2zf-C2H218.17.3e-067293223
                     EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                     +C+ C+k+Fs+  +L+ Hir+H
  PH01000329G0340 72 QCQLCSKVFSTCKSLREHIRMH 93
                     7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.1E-71034IPR007087Zinc finger, C2H2
SMARTSM003554.81032IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
SMARTSM003550.0177193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.2637198IPR007087Zinc finger, C2H2
PfamPF138943.0E-47293No hitNo description
Gene3DG3DSA:3.30.160.604.6E-47296IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.23E-117293No hitNo description
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SuperFamilySSF576679.23E-11267294No hitNo description
Gene3DG3DSA:3.30.160.603.2E-4270294IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.2E-10272295IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.45272299IPR007087Zinc finger, C2H2
SMARTSM003550.083272294IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280274294IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAPRGRPRKH WCNKCNKKFP SGRSLGGHMS RHWRIDEHPK STPIPPDIVV DLHVSLLGPC  60
DEKPLLPSSE TQCQLCSKVF STCKSLREHI RMHGEKMVVK PDEEAAGVIE ALTNANGDHN  120
VMVFSPVKRK RTKRETPAPN FEEVDAAVTL LLLSGHSDKT SAYEDWYWGD KDDNNLARNV  180
LKEVKLNALD HRLVPSVEFK KSKTDKNSAY KDCYGQCGKE NNLVPSVPKK VELNAFDHGL  240
VGDAELRKPR TDNSVKEVKC GDLSATVKAK SHRCNACGKS FWSGQALGGH MRCHRVPKCN  300
RHEGVVNCPD SVVMKEQKQR FELDSKLLDL RLPALTDGDY IRVGVKSEPE PWCMASSLQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000329G0340
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619008.11e-136uncharacterized protein LOC4352630 isoform X1
TrEMBLA0A0E0MNZ91e-145A0A0E0MNZ9_ORYPU; Uncharacterized protein
STRINGOPUNC12G15300.11e-146(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91122229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.11e-10C2H2-like zinc finger protein