PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000323G0330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | Dof | ||||||||
Protein Properties | Length: 246aa MW: 26213.2 Da PI: 6.5049 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.7 | 1.1e-37 | 53 | 110 | 5 | 62 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC+s++tkfCyynny++sqPr+fCk CrryWtkGG+lrnvPvGgg+rk+ +ss PH01000323G0330 53 GEPCPRCESRDTKFCYYNNYNTSQPRHFCKCCRRYWTKGGTLRNVPVGGGTRKKSSSS 110 678**************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-25 | 50 | 105 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.351 | 54 | 108 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.4E-31 | 54 | 108 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 56 | 92 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MQEQPLHAAE PGRRPAQQFA GVDLRRPKGY AAPSPPPVAT AAPAPAAKAV GEGEPCPRCE 60 SRDTKFCYYN NYNTSQPRHF CKCCRRYWTK GGTLRNVPVG GGTRKKSSSS SCSSPSSSSG 120 TAAKPQKPSK KRRAAPPDPT TSVDVVTAPD STKTTETTTT PPTDAASEIT TELVVPAMEE 180 DSFTDLLQPD YDVAVALGLD FSDYPAGRKA LLDPDSFEWP PAFDLGAYWS GAGFADPDPG 240 VFLNLP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000323G0330 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096612 | 0.0 | FP096612.1 Phyllostachys edulis cDNA clone: bphyem122f05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015696049.1 | 2e-90 | PREDICTED: LOW QUALITY PROTEIN: dof zinc finger protein MNB1A-like | ||||
Swissprot | P38564 | 1e-68 | MNB1A_MAIZE; Dof zinc finger protein MNB1A | ||||
TrEMBL | A0A0D9X963 | 2e-89 | A0A0D9X963_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR08G15690.1 | 3e-90 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 1e-28 | DOF zinc finger protein 1 |
Publications ? help Back to Top | |||
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