PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000323G0290
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 408aa    MW: 44773.1 Da    PI: 9.3858
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000323G0290genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.31.2e-1773122255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r +h++ E+rRR++iN++f+ LrellP++    ++K +K++ L +++eYI+ Lq
  PH01000323G0290  73 RSKHSATEQRRRSKINDRFQILRELLPHN----DQKRDKSSFLLEVIEYIRFLQ 122
                      889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.0E-2269143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1871146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.7171121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.74E-1473126No hitNo description
PfamPF000104.5E-1573122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-1377127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MPQQQPERKG VGGGGFMDAG SRSSGGAGFD DDDGLAARRE VSSSLKELTV RVERTGGSGS  60
GSAGTDQQPN TPRSKHSATE QRRRSKINDR FQILRELLPH NDQKRDKSSF LLEVIEYIRF  120
LQEKVQKYEV SCPEWSQENA KIMPWANMYF RSFWKNEQNK DQIPEDTSLD PSQIIKSGSS  180
PGFPFTRKTD DNNDAVASAA ASGAQGQEET DPIDHTSYKS AEIPGPINVA DNVISQPRAH  240
RTKSSLAEDR AVNGEMLNNP ELAIDEGTIS LSSQYSQELL STLNHALQNS GIDLSQASIS  300
VQINLGKRAI KRSAPGATST SKDCIRPVRG FGRKCCIANL MSVMAWQRCL GAWNPRIRHL  360
AADKLSMISW EPISNPKSSK TRDFDSLVAV GTMMTRGIAR SKLKRTT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000323G0290
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0954710.0FP095471.1 Phyllostachys edulis cDNA clone: bphyem213f18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235247.11e-162transcription factor BIM2 isoform X2
TrEMBLA0A0Q3M2K21e-160A0A0Q3M2K2_BRADI; Uncharacterized protein
STRINGBRADI3G38970.11e-160(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-45BES1-interacting Myc-like protein 2