PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000309G0960
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Dof
Protein Properties Length: 324aa    MW: 34409.3 Da    PI: 4.5786
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000309G0960genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.51.3e-373289461
           zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                     +a +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvP+Ggg+rkn++ 
  PH01000309G0960 32 AAPNCPRCDSLNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPLGGGCRKNRRG 89
                     5679***************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-361688IPR003851Zinc finger, Dof-type
PfamPF027015.6E-323388IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.5743488IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103672IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MLSSHPHEAM LPYAPRPPSL LVDRRYKQGA EAAPNCPRCD SLNTKFCYYN NYSLSQPRYF  60
CKGCRRYWTK GGSLRNVPLG GGCRKNRRGK SSVPSVAESI ASGRNATFGH RFPGPVRPDL  120
VLEGMFGNPA NPGQAMCVPA AADGSTIDLA MLYAKFLNNQ PADAGVGAVT PESAGHVDEA  180
FDTFSASSDL SPGVLAPAQF DPSQDGFAEW SGPVSSTDPT STTSTNTATT MLCTDVSVQA  240
ALGELNCAMD QSCFDSLGLP TDGASNLSSW CSIVPSLSTW EEAKYDSLDS FPDDAMSLHE  300
GMISAADHDW SVDCQGLEAL YMP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000309G0960
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682290.10.0uncharacterized protein LOC101752604
TrEMBLA0A2T7DDY70.0A0A2T7DDY7_9POAL; Uncharacterized protein
STRINGSi002230m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26593683
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.13e-38Dof family protein