 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PH01000305G0990 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
| Family |
MYB |
| Protein Properties |
Length: 264aa MW: 29168.8 Da PI: 10.3726 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PH01000305G0990 | genome | ICBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 57.2 | 3.9e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+W++eEd++lv ++ q+G ++W++ ++ g+ R++k+c++rw +yl
PH01000305G0990 14 KGAWSPEEDQRLVAYIGQHGHPNWRALPKQAGLLRCGKSCRLRWINYL 61
79******************************99************97 PP
|
| 2 | Myb_DNA-binding | 51.4 | 2.4e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++Tt+E++l+v++++ lG+ W++Ia+ ++ gRt++++k+ w+++l
PH01000305G0990 67 RGNFTTDEEDLIVRLHHTLGNS-WSAIAAQLP-GRTDNEIKNVWHTHL 112
89******************99.*********.************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 264 aa
Download sequence Send
to blast |
MGRAPCCEKE GLRKGAWSPE EDQRLVAYIG QHGHPNWRAL PKQAGLLRCG KSCRLRWINY 60
LRPDIKRGNF TTDEEDLIVR LHHTLGNSWS AIAAQLPGRT DNEIKNVWHT HLKKRLDDDR 120
KVGDGGGRQQ RKPKSKSAAG KAVDHEQFTA SPGRSSNITT SSGVTCSTVT ESAAAVSSSA 180
DNAATTSASH SGHQHQLVKE ESFSSAEFPI PPIIDESFWS STDVKVDPIC IPTYHSKKSK 240
QNQRIIKIPK ITKKRARTRR DSS*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK109011 | 1e-128 | AK109011.1 Oryza sativa Japonica Group cDNA clone:002-153-H11, full insert sequence. |
| GenBank | CT834744 | 1e-128 | CT834744.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA107G14, full insert sequence. |
| GenBank | Y11350 | 1e-128 | Y11350.1 O.sativa mRNA for myb factor, 1084 bp. |
| Publications
? help Back to Top |
- Schnaubelt D, et al.
Low glutathione regulates gene expression and the redox potentials of the nucleus and cytosol in Arabidopsis thaliana.
Plant Cell Environ., 2015. 38(2): p. 266-79
[PMID:24329757] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Ma X, et al.
CYCLIN-DEPENDENT KINASE G2 regulates salinity stress response and salt mediated flowering in Arabidopsis thaliana.
Plant Mol. Biol., 2015. 88(3): p. 287-99
[PMID:25948280] - Kim SH, et al.
Phosphorylation of the transcriptional repressor MYB15 by mitogen-activated protein kinase 6 is required for freezing tolerance in Arabidopsis.
Nucleic Acids Res., 2017. 45(11): p. 6613-6627
[PMID:28510716] - Chezem WR,Memon A,Li FS,Weng JK,Clay NK
SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis.
Plant Cell, 2017. 29(8): p. 1907-1926
[PMID:28733420] - Pal S, et al.
TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
Plant Physiol., 2017. 175(2): p. 916-926
[PMID:28827455]
|
