PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000305G0590
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 851aa    MW: 93517 Da    PI: 5.8457
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000305G0590genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.5e-192684357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le++++++++ps ++r++L +++    +++ +q+kvWFqNrR ++k+
  PH01000305G0590 26 KYVRYTPEQVEALERMYAECPKPSSTRRQQLLRECpilaNIEPKQIKVWFQNRRCRDKQ 84
                     5678****************************************************996 PP
2START164.86e-521633672201
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  ++++ ve+l d++  W +++++ e+      g  g+++l
  PH01000305G0590 163 IAEETLTEFLSKATGTAVDWVQMPGMKPGPDSYGIVAISHGCRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTMFPAGngGTIEL 255
                      789*******************************************************9999999999.***********999999999***** PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                      ++++++a+++lvp Rdf+++Ry+ ++++g++v++++S++     ++    +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++lr+
  PH01000305G0590 256 INMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGSStasAQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRP 349
                      ***************************************9999888888899****************************************** PP

                      HHHHHHHHHHHHHHHHTX CS
            START 184 lvksglaegaktwvatlq 201
                      l++s+++ ++k+++a+l+
  PH01000305G0590 350 LYESSRVVAQKMTTAFLR 367
                      ****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4182185IPR001356Homeobox domain
SMARTSM003891.0E-152389IPR001356Homeobox domain
SuperFamilySSF466891.37E-162689IPR009057Homeodomain-like
CDDcd000861.80E-162686No hitNo description
PfamPF000461.7E-162784IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-182881IPR009057Homeodomain-like
CDDcd146863.00E-678117No hitNo description
Gene3DG3DSA:1.20.5.1704.1E-482132No hitNo description
PROSITE profilePS5084826.319153354IPR002913START domain
CDDcd088752.27E-73157373No hitNo description
Gene3DG3DSA:3.30.530.201.7E-19162348IPR023393START-like domain
SuperFamilySSF559619.48E-34162351No hitNo description
SMARTSM002349.7E-37162372IPR002913START domain
PfamPF018526.7E-50163367IPR002913START domain
PfamPF086701.1E-48707849IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MAAAVAMRSG SGSDGGYDKA GIDSGKYVRY TPEQVEALER MYAECPKPSS TRRQQLLREC  60
PILANIEPKQ IKVWFQNRRC RDKQRKEASR LQAVNRKLTA MNKLLMEEND RLQKQVSQLV  120
HENAYMKQQL QNPSLANDTS CESNVTTQNP LKDASNPSGL LSIAEETLTE FLSKATGTAV  180
DWVQMPGMKP GPDSYGIVAI SHGCRGVAAR ACGLVNLEPT KIVEILKDRP SWFRDCRSLE  240
VFTMFPAGNG GTIELINMQM YAPTTLVPAR DFWTLRYTTT MEDGSLVVCE RSLSGSGGGS  300
STASAQQFVR AEMLPSGYLV RPCEGGGSIV HIVDHLDLEA WSVPEVLRPL YESSRVVAQK  360
MTTAFLRSIL TILVIKALRH IRQIAQETSG EVVYALGRQP AVLRTFSQRL SRGFNDAISG  420
FNDDGWSVMG GDGIEDVIIA CNSKKIRNNS TAANAFGAPG GVICAKASML LQSVPPAVLV  480
RFLREHRSEW ADYNFDAYSA LALKTSSCSL PGLRPMRFSG SQIIMPLAHT VENEEILEVV  540
RLEGQALTHD EGLLSRDIHL LQLCTGIDEK SMGSCFQLVF APIDELFPDD APLISSGFRV  600
IPLDMKTDGA PTGRTLDLAS SLEVGSTTQQ ATGDASLDDC RNLRSVLTIA FQFPYEIHLQ  660
DSVATMARQY VRSVVSAVQR VSMAISPPRS GVNAGQKIFS GFPEAATLAC WICQSYQFHL  720
GVELLRQADE AGESLLRMLW DYEDAILCCS FKEKPVFTFA NEMGLNMLET SLVALQDLSL  780
DKIFDEAGRK ALYSEIPKLM EQGYVYLPAG VCLSGMGRHV SFEQAVAWKV LGEDNNVHCL  840
AFCFVNWSFV *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000305G0590
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0138030.0DQ013803.1 Phyllostachys praecox HB1 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614901.10.0homeobox-leucine zipper protein HOX9
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
TrEMBLQ30KI40.0Q30KI4_9POAL; HB1 (Fragment)
STRINGOPUNC10G11850.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein