PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000304G1020
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 138aa    MW: 14423 Da    PI: 8.9298
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000304G1020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.5e-053153123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C +C++ F+++  L  H++ H
  PH01000304G1020 31 FSCCYCPRKFRSSQALGGHQNAH 53
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.27E-53057No hitNo description
PROSITE profilePS5015710.0763158IPR007087Zinc finger, C2H2
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MDMGMDREEG LNLSLSLQPS PLSPPRFQAV FSCCYCPRKF RSSQALGGHQ NAHKLQRNLA  60
RRGREAAKSS SFAEAEGGQG KAGGESAPRS AEPDAADERG GGKHRHRLQG SGGAASSSGA  120
RGNGELADEM IDLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000304G1020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0668263e-53BT066826.1 Zea mays full-length cDNA clone ZM_BFb0076P10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581274.27e-44uncharacterized protein LOC100830698
TrEMBLA0A287IJB43e-45A0A287IJB4_HORVV; Uncharacterized protein
STRINGTraes_2AL_C81692E4F.11e-47(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69922646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-13zinc finger protein 2