PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PH01000304G1020

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

C2H2

Protein Properties

Length: 138aa MW: 14423 Da PI: 8.9298

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000304G1020	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.5e-05	31	53	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C++ F+++ L H++ H PH01000304G1020 31 FSCCYCPRKFRSSQALGGHQNAH 53 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.27E-5	30	57	No hit	No description
PROSITE profile	PS50157	10.076	31	58	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	33	53	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MDMGMDREEG LNLSLSLQPS PLSPPRFQAV FSCCYCPRKF RSSQALGGHQ NAHKLQRNLA 60 RRGREAAKSS SFAEAEGGQG KAGGESAPRS AEPDAADERG GGKHRHRLQG SGGAASSSGA 120 RGNGELADEM IDLSLKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000304G1020

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT066826	3e-53	BT066826.1 Zea mays full-length cDNA clone ZM_BFb0076P10 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003581274.2	7e-44	uncharacterized protein LOC100830698
TrEMBL	A0A287IJB4	3e-45	A0A287IJB4_HORVV; Uncharacterized protein
STRING	Traes_2AL_C81692E4F.1	1e-47	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6992	26	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	1e-13	zinc finger protein 2