PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000299G1040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TALE
Protein Properties Length: 580aa    MW: 63030.9 Da    PI: 6.3477
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000299G1040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.11.4e-083523891954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +e+  LA+++gL+  qV++WF N R +
  PH01000299G1040 352 FEHflHPYPKDSEKLMLARQIGLSRGQVSNWFINARVR 389
                      554459******************************88 PP
2BELL112.13.1e-36214285172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      erq+lq+k + L+ +l++Vd+rY++y++q+q+v+ssF+avag g+ kpYt+lAl++iSrhFr+L+dai  q+
  PH01000299G1040 214 ERQDLQNKVTALMAMLDQVDRRYRHYYHQMQIVVSSFDAVAGAGAGKPYTALALQTISRHFRSLRDAIGAQV 285
                      799*****************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.2E-46143283IPR006563POX domain
PfamPF075266.7E-49146281IPR006563POX domain
PROSITE profilePS5007112.131330393IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-26332405IPR009057Homeodomain-like
CDDcd000866.74E-12333394No hitNo description
SMARTSM003894.9E-9333397IPR001356Homeobox domain
SuperFamilySSF466891.11E-16334400IPR009057Homeodomain-like
PfamPF059201.6E-15350389IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MATFFSTSTD QRDLTAAGDM SFHHYPPSSN PYLYSSTGGL IPFPATIASQ SHIAHGDGRD  60
EPAAFMSARE GPTDNAEMGL QTQLLMANDH ANASATQQHQ GLSLSLGTQV PMSLYQYRPA  120
GMAAASLLSP SQATMASRHA QTNVYVQNSR YLKASRELLD EVVNVRDAIK RKGDKNQGKD  180
SGECKVDTEK SEDKAGSNQQ EQESNSSAEL SPSERQDLQN KVTALMAMLD QVDRRYRHYY  240
HQMQIVVSSF DAVAGAGAGK PYTALALQTI SRHFRSLRDA IGAQVQSARR SLGEQDASPQ  300
GGGLSRLRYI DQQLRQKRAM QQFGMMQQPQ HAWRPQRGLP ESAVSVLRAW LFEHFLHPYP  360
KDSEKLMLAR QIGLSRGQVS NWFINARVRL WKPMIEEMYK EEFGAEMDSN SSSGNAGKGK  420
DEAVPSEDRD EFQSPSSAAK HVGASQLNPF KSEAMAGMDA SGVVLSNLDV GAMDTYATGL  480
NLNHHGPGAR GSSSLLQDAL AHHGGDARFV AYDDMADLGG YDGGSVSLTL GLQHCNNAGP  540
VPAEQQGLLY GSAGDFEFMN GSDDRQRFGS SQLLHDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-16339396158Homeobox protein Meis1
4xrs_B4e-16339396158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000299G1040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680340.0AK068034.1 Oryza sativa Japonica Group cDNA clone:J013131E13, full insert sequence.
GenBankAK0998290.0AK099829.1 Oryza sativa Japonica Group cDNA clone:J013104D06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649449.10.0PREDICTED: BEL1-like homeodomain protein 7
RefseqXP_015691112.10.0PREDICTED: BEL1-like homeodomain protein 7
SwissprotQ9SIW11e-123BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLA0A1E5W1C90.0A0A1E5W1C9_9POAL; BEL1-like homeodomain protein 7
STRINGOPUNC03G04600.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-123BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]