PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PH01000266G0140

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Dof

Protein Properties

Length: 539aa MW: 58714 Da PI: 8.6533

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000266G0140	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.8	1.1e-38	168	228	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCy+nny+++qPr+fC++C+ryWt+GG++rnvPvG+grr+nk++s PH01000266G0140 168 PDKILPCPRCNSMETKFCYFNNYNVNQPRHFCRNCQRYWTAGGTMRNVPVGAGRRRNKHAS 228 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-30	154	225	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-31	170	226	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	172	226	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	174	210	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence Send to blast
MAALRDRDRD RDPAIKLFGR TILLLDAAAA AAAAASAFGI FLGRGVRIAI HYLAGRFLER 60 RRTNLLYVVT ISHVKPIPKI ILQPAFRNTK PIHVITKLTN DVKNNDGIPC VPNKLLNVEA 120 IPFCSKNSEE NDLQAIIRQG GKMETDSKSE EVKTESDVSG QEKVLKKPDK ILPCPRCNSM 180 ETKFCYFNNY NVNQPRHFCR NCQRYWTAGG TMRNVPVGAG RRRNKHASHY RHAMMPCDNI 240 VAAPGDISEV IHHQALPLPG PIKENETVTK FGSEVPVCKS MSSVLNIGEQ KNTDLVSLAS 300 GDNKEEKSCA SSAAVSGCSE NRMPDNAVKE GPNNVSGYCN VKEGPNNVSG YCNGTTLPHP 360 HIQSYPTGPA LVFPWCPGWN SVVVMAATQC STDPVHGLEN AKPSPPLWSP PSTMAAPGIC 420 TPVVPFPLVP PFWSCIPGWP NGVWTSPWPG SNGTAVPSIP PDKITGPGNN SPTLGKHSRE 480 ANLQEEEKTE KNLWVPKTLR IDDPTEAAKS SIWDTLSIKP DDEKGIFKPF QSKVIKNG*

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence Send to blast

MAALRDRDRD RDPAIKLFGR TILLLDAAAA AAAAASAFGI FLGRGVRIAI HYLAGRFLER  60
RRTNLLYVVT ISHVKPIPKI ILQPAFRNTK PIHVITKLTN DVKNNDGIPC VPNKLLNVEA  120
IPFCSKNSEE NDLQAIIRQG GKMETDSKSE EVKTESDVSG QEKVLKKPDK ILPCPRCNSM  180
ETKFCYFNNY NVNQPRHFCR NCQRYWTAGG TMRNVPVGAG RRRNKHASHY RHAMMPCDNI  240
VAAPGDISEV IHHQALPLPG PIKENETVTK FGSEVPVCKS MSSVLNIGEQ KNTDLVSLAS  300
GDNKEEKSCA SSAAVSGCSE NRMPDNAVKE GPNNVSGYCN VKEGPNNVSG YCNGTTLPHP  360
HIQSYPTGPA LVFPWCPGWN SVVVMAATQC STDPVHGLEN AKPSPPLWSP PSTMAAPGIC  420
TPVVPFPLVP PFWSCIPGWP NGVWTSPWPG SNGTAVPSIP PDKITGPGNN SPTLGKHSRE  480
ANLQEEEKTE KNLWVPKTLR IDDPTEAAKS SIWDTLSIKP DDEKGIFKPF QSKVIKNG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000266G0140

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003565663.1	0.0	cyclic dof factor 2
TrEMBL	A0A1D8F0I5	0.0	A0A1D8F0I5_9POAL; Dof protein
STRING	EMT11673	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	6e-63	cycling DOF factor 2