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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000260G1030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bHLH | ||||||||
Protein Properties | Length: 215aa MW: 23065.2 Da PI: 10.1042 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.4 | 2.2e-07 | 33 | 95 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C..............TTS-.STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.as...........kapskK.lsKaeiLekAveYIksLq 55 + +E++RR +++ +L +l+P a ++ + + L A YIk+L+ PH01000260G1030 33 RKDVEKNRRLHMKGLCLKLSSLIPAtAKhhhlhysnsspPSNK-DtITQLDHLDNAAAYIKQLK 95 5789*********************666*********743344.3599**************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.88 | 28 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.5E-11 | 30 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-9 | 31 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-4 | 33 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0033 | 34 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MKSRRQSSGG SASAAAAAAG EGNNTSGGCK MERKDVEKNR RLHMKGLCLK LSSLIPATAK 60 HHHLHYSNSS PPSNKDTITQ LDHLDNAAAY IKQLKERIDE LKQKKEGGGA ARFSSSSSSG 120 EAKPTAGGVR VSMPVIEVRY QDATLDVVLI SKVGKPFKLH EVITVLEQEG AEVVNASFSV 180 IGDKIFYTIH SQALSSRIGL EASRVSERLR DLLL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000260G1030 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP094213 | 0.0 | FP094213.1 Phyllostachys edulis cDNA clone: bphylf003c24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967963.1 | 6e-89 | transcription factor bHLH168 | ||||
TrEMBL | A0A446P8Q2 | 8e-89 | A0A446P8Q2_TRITD; Uncharacterized protein | ||||
STRING | Si002847m | 2e-88 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP829 | 36 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10586.1 | 8e-23 | bHLH family protein |