PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000225G0520
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 717aa    MW: 80154.3 Da    PI: 6.7878
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000225G0520genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-0890159854
                      HHHHHHHHHHHHHHHHHCTSCCC..........................TTS-STCHHHHHHHHHHHHHH CS
              HLH   8 rErrRRdriNsafeeLrellPkas.......................kapskKlsKaeiLekAveYIksL 54 
                      rE  RRd +Nsa+++L++llP++                         ++++K++Ka++   Av++Ik+L
  PH01000225G0520  90 REVLRRDALNSAYHTLQSLLPSPGkisdkmfvafpfkfvlvmaiharPTKQEKPDKASVAGGAVRHIKDL 159
                      6778******************888*******************************************99 PP
2HLH33.76.3e-11516562354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +a+ + Er RR+++N ++ +Lr l P+a     +K++ a+i+  A+eYI +L
  PH01000225G0520 516 KANFATERERREQLNVKYRTLRMLFPNA-----TKNDRASIVGAAIEYIDEL 562
                      68899***********************.....9***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.37282159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-485165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.06E-488164No hitNo description
SuperFamilySSF474592.09E-690169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-690159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-794163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.014513562IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-11516580IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-8516562IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-7519568IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-9520576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.90E-7522567No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MEGAVHSYSS ARRNAVTRVC GICECILHAS THQEPQLEQG GHETPSSPFK TSYTFSSSRS  60
KQEADCPMLQ GERAVEVSSI PTIPSEDERR EVLRRDALNS AYHTLQSLLP SPGKISDKMF  120
VAFPFKFVLV MAIHARPTKQ EKPDKASVAG GAVRHIKDLK KRIKEVVTPK LHRGCGRCHQ  180
AHQGPQEKDK GSTLLQNYIA EGKRRKSVKE KHQSDTCVVS CHYVGEADHE ESIKGQTATE  240
IWSEGSRHCF GKMIVGAGCF DDSHDQRHMA ESLIHDSTQA PKCTENTNID IQKFRVSSFS  300
TEELSNLTNL SSEAQRAINR LQHQLGIDLE QEPPLVESAN WDPAICTIQD HIINHQFSED  360
PQNILVEQQI QQYDAALYPK GVYTPAPDLL NLMQCTVDPA FPATTFVFGD TTLNGTNYLD  420
LNSELTGVAA IPDSGLMFTS DSALQLGYHG TQSHLVKDIC HSLPQNYGLF PCEDETDAMV  480
GVGNVGDLFQ EIDDRQFDSV LECRRGKGKF RKGKGKANFA TERERREQLN VKYRTLRMLF  540
PNATKNDRAS IVGAAIEYID ELNRTVKELK ILVEEKRHGN NRRKMIKWDQ EAAADGESSS  600
MRPMRDDQDN QLNGAIRSSW VQRRSKECHV DVRIVDDEVN IKLTEKKKAN SLLHAAKVLD  660
EFQLELIHVV GGIIGDHHIF MFNTKVSEGS SVYACAVARR LLQAVDAQHQ ALNIFN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000225G0520
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1195090.0AK119509.1 Oryza sativa Japonica Group cDNA clone:001-134-F08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634639.10.0transcription factor EAT1
RefseqXP_015634640.10.0transcription factor EAT1
RefseqXP_015634641.10.0transcription factor EAT1
SwissprotQ7X8R00.0EAT1_ORYSJ; Transcription factor EAT1
TrEMBLA0A0D9ZQ510.0A0A0D9ZQ51_9ORYZ; Uncharacterized protein
STRINGOGLUM04G23900.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.13e-52bHLH family protein