PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000217G0720
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family CPP
Protein Properties Length: 455aa    MW: 50249.2 Da    PI: 8.4399
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000217G0720genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.54.2e-162159139
              TCR  1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39
                     k++kgC+Ckks ClkkYCeCf+a+  Cs++C+C dCkN 
  PH01000217G0720 21 KHNKGCHCKKSGCLKKYCECFQANILCSKSCRCMDCKNF 59
                     589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163419.809161IPR005172CRC domain
SMARTSM011147.9E-182162IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.0E-122459IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MWYYAILKAQ DNSGAVPLQP KHNKGCHCKK SGCLKKYCEC FQANILCSKS CRCMDCKNFQ  60
GSEERQALVQ VDNASDRNHI KQAANIALNG AIGSSGYKCS PVRRKKSQED SRGEQCMSEA  120
QFQQANHADV SQLTPSCTGI GGHNVGSSQS KTSKMVYRSS LANTIHLSDV NDLVKHVVIA  180
CRKAAEALPT TSDSLLCKTR FRWKSRSAAK NGNRPVTGFP RKNPDKVCLN LLKNQPKFEN  240
WNLLNREKPA VPGPHRFSSN SFLLIFTDNK VEEMEAEKEF HTNDGLDNDK NKEQDLKEAS  300
PMDIHSKACT DQQNINELES RFSDASKDTR PASPGTQSLM CDEPDTTFGN DYRSSFMATS  360
CDQDISERNA VQENLVLTGL RDYLRVLITR GKINEAKSSS EAATELNARR YHGATPAFSP  420
VKTEEKSTAS NGPETLRNSQ LSISNDESKG KIGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-14217183133Protein lin-54 homolog
5fd3_B7e-14217183133Protein lin-54 homolog
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000217G0720
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.14e-43Tesmin/TSO1-like CXC domain-containing protein