PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000216G0990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 63aa MW: 7135.37 Da PI: 11.0568 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.4 | 2.8e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+g+l+e+s+ PH01000216G0990 9 KRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGRLFEFST 59 79***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.8E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.207 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.37E-30 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.57E-37 | 2 | 61 | No hit | No description |
PRINTS | PR00404 | 7.0E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.5E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 63 aa Download sequence Send to blast |
MGRGKVELKR IENKISRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGRLFEFSTS 60 SW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 3e-21 | 1 | 62 | 1 | 62 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-21 | 1 | 62 | 1 | 62 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-21 | 1 | 62 | 1 | 62 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-21 | 1 | 62 | 1 | 62 | Myocyte-specific enhancer factor 2B |
6c9l_A | 3e-21 | 1 | 62 | 1 | 62 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-21 | 1 | 62 | 1 | 62 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-21 | 1 | 62 | 1 | 62 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-21 | 1 | 62 | 1 | 62 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-21 | 1 | 62 | 1 | 62 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-21 | 1 | 62 | 1 | 62 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:16217607, ECO:0000269|PubMed:9085264, ECO:0000269|Ref.8}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000216G0990 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU237135 | 4e-97 | GU237135.1 Fargesia nitida MADS2 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002437883.1 | 2e-35 | MADS-box transcription factor 5 | ||||
Refseq | XP_004964768.1 | 3e-35 | MADS-box transcription factor 5 | ||||
Refseq | XP_025811305.1 | 3e-35 | MADS-box transcription factor 5-like | ||||
Swissprot | A2Y9P0 | 4e-36 | MADS5_ORYSI; MADS-box transcription factor 5 | ||||
Swissprot | Q0DEB8 | 4e-36 | MADS5_ORYSJ; MADS-box transcription factor 5 | ||||
TrEMBL | M7Z246 | 7e-36 | M7Z246_TRIUA; MADS-box transcription factor 1 | ||||
STRING | TRIUR3_12423-P1 | 1e-36 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.3 | 8e-35 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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