PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000211G0640
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Dof
Protein Properties Length: 365aa    MW: 37197.5 Da    PI: 8.9056
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000211G0640genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.47.6e-3970131263
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                      ++++ +cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss
  PH01000211G0640  70 QKEKANCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 131
                      56889*****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-3067128IPR003851Zinc finger, Dof-type
PfamPF027011.0E-3272128IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.74274128IPR003851Zinc finger, Dof-type
PROSITE patternPS01361076112IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDAAHWHQGL GLVKPMEATL MASNPNPNAN SNRPPAPPPA AGAQRPAAPP AAGASAAAAG  60
PGTERRARPQ KEKANCPRCN STNTKFCYYN NYSLQQPRYF CKTCRRYWTE GGSLRNVPVG  120
GGSRKNKRSS SSVVSSAAAA AAASTSAAVS GTVPVGLAAK NPKLMHDGVQ DLNLEFPHHH  180
GRGLQPPEFS AFPSLESSSV CNPGANMVAN GSGGRGVGAL SAMELLRSTG CYVPLPQVQL  240
GMPPEYAAAG FSLGELRMLP PPQQQQVQTM LGFSLDTHGT GGGGGAGAYG ACSAGLQGVQ  300
ESAAGRLLFP FEDLKPVVSA GGGASGGGDQ FEHSKDQGGG GHETLGFWNN SMIGNGGSNG  360
GGGSW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000211G0640
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0924770.0FP092477.1 Phyllostachys edulis cDNA clone: bphylf047f05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826520.11e-145dof zinc finger protein 2-like isoform X1
SwissprotB9F1L81e-136DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBLA0A1E5VJZ31e-147A0A1E5VJZ3_9POAL; Uncharacterized protein
STRINGPavir.Aa00902.1.p1e-140(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23693486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.12e-41Dof family protein
Publications ? help Back to Top
  1. Washio K
    Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains.
    Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62
    [PMID:11470159]