PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000201G0400
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 304aa    MW: 33253.7 Da    PI: 7.579
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000201G0400genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.95e-1599150155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+++L+
  PH01000201G0400  99 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYVRELE 150
                      79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.07E-1597154No hitNo description
PROSITE profilePS5088816.2498149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-1898165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-1299150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-1599162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-11104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MALEAVVYPQ DRSGYGHKGS PYTLPWCDTA GFGEPCGEWD PLFTSLVQNT EEWGLDSKAS  60
PEREAAVVAC APPVQVGAAT RRKRRRTKIV KNKEEIKTQR MTHIAVERNR RRQMNEYLAV  120
LRSLMPPSYA QRGDQASIVG GAINYVRELE QLVQSLEAQK SQKGHSSSTE GVQSPFAGFF  180
TFPQYSTSAA ASHGGNVDNA RKIKAETTTP APAIADIEVS MVEGHANLKV QAPQRPRQLL  240
KLVPGLQQLG LTTLHLNMTT VDAMVMYSFS LKVEDECKLG SLEEIAAAVH EILGRIQEEA  300
GFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18185RKRRR
28186RKRRRT
399110RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000201G0400
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0588092e-50AK058809.1 Oryza sativa Japonica Group cDNA clone:001-003-C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983211.11e-135transcription factor bHLH96
SwissprotQ9C7T43e-77BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0A9JFW21e-137A0A0A9JFW2_ARUDO; Uncharacterized protein
STRINGSi038653m1e-125(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-74bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]