PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000200G0640

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Dof

Protein Properties

Length: 409aa MW: 41043.8 Da PI: 8.4815

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000200G0640	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.7	2.6e-38	114	175	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lr vPvGgg+rknk+sss PH01000200G0640 114 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRSVPVGGGSRKNKRSSS 175 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	110	172	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.0E-33	116	172	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.742	118	172	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	120	156	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MPTTNGHSKG FLPWWFPSLF CGIPISGARI AGGSQEIGVL AWMQPTGTSA APCVCPQGLG 60 LVKPMEEMLM GASANQGSNP NPPAPAPSSA PGAVAGAGAG AGAGSTERRA RPQKEKALNC 120 PRCNSTNTKF CYYNNYSLQQ PRYFCKTCRR YWTEGGSLRS VPVGGGSRKN KRSSSSSASA 180 STTTSVTSSS MASTAGPAGA APKNAKLAHE GAQDLNLAFP HHGGLQAPTE FMAFPSLESS 240 NMCNPGGAMV SNGRAGGAGP ALGALSAMEL LRSTGFYMPM QMPGEYAAAG FALGEFRPPP 300 PPPPSQSVLG FSLDAHGSVG GASAAGYGSS AGLHGVPESE GRLLFPFEDL KPTVSSGGGG 360 GASGGGSGAG VDGGHQFEQG KEQGSGPPGG QHDTPGFWNG MIGGGTSW*

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MPTTNGHSKG FLPWWFPSLF CGIPISGARI AGGSQEIGVL AWMQPTGTSA APCVCPQGLG  60
LVKPMEEMLM GASANQGSNP NPPAPAPSSA PGAVAGAGAG AGAGSTERRA RPQKEKALNC  120
PRCNSTNTKF CYYNNYSLQQ PRYFCKTCRR YWTEGGSLRS VPVGGGSRKN KRSSSSSASA  180
STTTSVTSSS MASTAGPAGA APKNAKLAHE GAQDLNLAFP HHGGLQAPTE FMAFPSLESS  240
NMCNPGGAMV SNGRAGGAGP ALGALSAMEL LRSTGFYMPM QMPGEYAAAG FALGEFRPPP  300
PPPPSQSVLG FSLDAHGSVG GASAAGYGSS AGLHGVPESE GRLLFPFEDL KPTVSSGGGG  360
GASGGGSGAG VDGGHQFEQG KEQGSGPPGG QHDTPGFWNG MIGGGTSW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	355	366	SGGGGGASGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000200G0640

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020147698.1	1e-140	dof zinc finger protein DOF4.6-like isoform X1
Swissprot	Q9SXG8	1e-128	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	A0A0E0KU29	1e-147	A0A0E0KU29_ORYPU; Uncharacterized protein
STRING	OPUNC04G19770.2	1e-147	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-38	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]