 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PH01000197G0410 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
| Family |
bHLH |
| Protein Properties |
Length: 398aa MW: 42864.6 Da PI: 8.4107 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PH01000197G0410 | genome | ICBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 20.3 | 9.7e-07 | 215 | 262 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+++++ + RR+ri +++ L+el+P + +k Ka +L + ++Y++sLq
PH01000197G0410 215 TKSMNAQVRRERISERMRYLQELVPGC----NKVTGKAGMLDEIINYVQSLQ 262
67888999******************9....677*****************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 398 aa
Download sequence Send
to blast |
MAQCGGDVSR HPQSSRRAQQ GTIESLCQGL LDDVMVDDDK YRAMCGAFGY LQEWPDLSSI 60
CYTGFGASPS DAAAQETSNG NSSFSCSGGR KRRPDAYLEA KGDSSNVCKR PRGKQQLCDL 120
DQIAAGVGVG KGKRGRPKPG TKKKAELAWS KDFRAASTVT AGQKTDYIHV RARRGQATDN 180
HSLAERVLTA LNQWTCTSDV LKLVYVLVAR INGMTKSMNA QVRRERISER MRYLQELVPG 240
CNKVTGKAGM LDEIINYVQS LQKQVEFLSM KIAASNPVVN FNIVEDFFGR QLNQACNPAS 300
LPGMTLPIGQ LEQSCLQMSP MLMQPAAGSP GFGLEMVFNN PYPPVPVGPM SAATPVSVPA 360
TAPIESCLNV NGAAAWDTGS QNLFGGFDAQ FQSVQSE*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK119183 | 3e-93 | AK119183.1 Oryza sativa Japonica Group cDNA clone:001-038-D03, full insert sequence. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT4G34530.1 | 5e-42 | cryptochrome-interacting basic-helix-loop-helix 1 |
