PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000188G0230
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Dof
Protein Properties Length: 435aa    MW: 46086.6 Da    PI: 8.0806
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000188G0230genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.28.5e-39101161262
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                      ++k+l+cprC s++tkfCyynny+ +qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k++s
  PH01000188G0230 101 PDKILPCPRCSSMDTKFCYYNNYNNNQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSAS 161
                      7899*****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2697150IPR003851Zinc finger, Dof-type
PfamPF027011.3E-31103159IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.444105159IPR003851Zinc finger, Dof-type
PROSITE patternPS013610107143IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MGACKAAGGG GGGGDCLIKL FGKTIIPVPD AGAGDVDKDF EHSGGSTTET KVQENIPQDS  60
TGSPPQPEVA DTEDSSAVKN SSADQQQQGD TANQKEKLKK PDKILPCPRC SSMDTKFCYY  120
NNYNNNQPRH FCKNCQRYWT AGGAMRNVPV GAGRRKSKSA SAASHFLQGV RAALPGDPIC  180
TPVKTNGTVL SFGSDTPTLH LTEQMKHLKE KLIPITRIKN IDDPSVGSCA EGLAKGEDSN  240
QVNLKEKVTA DKSATVAQHP CMNGGSMWPF SCAPSPAYYT SSIAIPFYPA AAAYWGCMVP  300
GAWNTPWPPQ SHSQSGSSPS AASPVSTMSN CFKSRKHPRD GDEEGDAKGN GKVWVPKTVR  360
IDDADEVARS SIWSLIGIRG DKVGTDDGRG CKLEGFFEPK AKAKTATHTV INSLPFLEGN  420
PAALSRSVTF QEGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000188G0230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558722.10.0cyclic dof factor 1
TrEMBLA0A1D8F0I10.0A0A1D8F0I1_9POAL; Dof protein
STRINGBRADI1G73710.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20993793
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.22e-49cycling DOF factor 2