PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000183G0570
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 898aa    MW: 99109.2 Da    PI: 6.4787
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000183G0570genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.5e-23122223199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g +++p++ ae+       ++++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  PH01000183G0570 122 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSLQPPS-QDLIATDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WND 212
                      99*****************************9777765.59************************************************..777 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      + +l+++++r+
  PH01000183G0570 213 NNQLLLGIRRA 223
                      7778***9997 PP
2Auxin_resp113.91.5e-37248331183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+t+s F+++YnPras+seFv++++k++k ++ ++vsvGmRf++ fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k
  PH01000183G0570 248 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKPVYhTRVSVGMRFRILFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 331
                      79*******************************999789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-47109251IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-41113237IPR015300DNA-binding pseudobarrel domain
CDDcd100176.58E-22121222No hitNo description
PfamPF023621.8E-21122223IPR003340B3 DNA binding domain
SMARTSM010197.8E-24122224IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548122224IPR003340B3 DNA binding domain
PfamPF065071.5E-32248331IPR010525Auxin response factor
PfamPF023091.7E-7761846IPR033389AUX/IAA domain
SuperFamilySSF542771.44E-6763839No hitNo description
PROSITE profilePS5174523.2764848IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 898 aa     Download sequence    Send to blast
MPRPLPENGG EQRCLNSELW HACAGPLVSL PVVGSRVVYF PQGHSEQVAA STNKEVDAQI  60
PNYPNLPPQL ICQLHNVTMH ADAETDEVYA QMTLQPLSPE EQKEPFLPIE LGAASKQPTN  120
YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDFSLQPPSQ DLIATDLHDN EWKFRHIFRG  180
QPKRHLLTTG WSVFVSAKRL VAGDSVIFIW NDNNQLLLGI RRANRAQTVM PSSVLSSDSM  240
HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK PVYHTRVSVG MRFRILFETE  300
ESSVRRYMGT ITGISDLDSV RWPNSHWRSV KVGWDESTAG DKQPRVSLWE IEPLTTFPMY  360
PTAFPSRLKR PWASGLPSVY GMFNGGKNDD FARYSSLMWL RDGDRGAQSL NFQGLGASPW  420
LQPRIDSPLL GLKPDAYQQM AAAALEEIRA GDPLKQSSAL LQFQQTQNLN GGLNSVFANH  480
VLQQMQYQSQ QSPLQTVQQG YSQNTSNSGF LQTHLQQLQL HNSQQLQKQQ ESLPQQQQKQ  540
QILQQQSHQD MQQQLSSSCH RIADVPSSMS ESGSVSQPHS SLLTGSLFYQ QNLLEGNSDP  600
SLHLHNGFHN FSSQEALNLL SLPRTSQLLA PEGWPSKRLA VEPLVHLEAQ SLQPKLEKLN  660
HQTNASHFPG TLPPLSTRDC SSVQACGTDV ENHLISSSFA HQDGMTSVRG GGGSGTDSMA  720
IPLLRYSGAD LAPGNTLATS NCLGESGTFN PLDNICGVNP SQGGTFVKVY KSGSPGRSLD  780
ITRFGSYYEL RSELERLFGL EGQLKDPVRS GWQLVFVDRE NDILLVGDDP WQEFVNSVWC  840
IKILSPQEGQ QMVRDGDGLL SAPGARMLQS NVFEDYSASH DMQNLTGNIA SVAPLDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-162735243388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000183G0570
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237021.10.0auxin response factor 25
SwissprotQ2QM840.0ARFY_ORYSJ; Auxin response factor 25
TrEMBLA0A0D3HWP70.0A0A0D3HWP7_9ORYZ; Auxin response factor
TrEMBLI1R7U10.0I1R7U1_ORYGL; Auxin response factor
STRINGBRADI4G01730.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127122934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Gao S, et al.
    CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.
    Plant Physiol., 2014. 165(3): p. 1035-1046
    [PMID:24808099]