PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000179G0720
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 285aa    MW: 30606.9 Da    PI: 4.5838
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000179G0720genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.3e-12100144655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + Er RR+r+N+++  Lr ++P+      +K++Ka+i + A+ YI +Lq
  PH01000179G0720 100 VISERDRRKRLNEKLYALRGVVPNI-----TKMDKASIIRDAIAYIEQLQ 144
                      578*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.66394143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-1397148No hitNo description
SuperFamilySSF474593.93E-1797159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-1099144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-16100161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-15100149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDSKDREKDT EEMWASQDNL VPMEADMGLS FDFCLPTPHF FEPHELADVD SMYVPNEDSL  60
SGLYSCYGDS SSPDGANSCS ATTTMMVATA ATAKAASKNV ISERDRRKRL NEKLYALRGV  120
VPNITKMDKA SIIRDAIAYI EQLQEQERQM LAEITALESA AAAAAKTENI VPIGGAEGDG  180
VAFPQRKKMR RAPSISSIDD DALCSAASPP VEILEVQVSE VGEKVAVVNV RCGKARDAMA  240
KVCRALESLR LKVVTASVAT VAGSMVHTML IEVTIILSIS EILA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184190QRKKMRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000179G0720
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3651952e-38AK365195.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2031O06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176410.11e-107transcription factor bHLH35-like isoform X2
RefseqXP_020176412.11e-107transcription factor bHLH35-like isoform X3
TrEMBLA0A453BRX31e-105A0A453BRX3_AEGTS; Uncharacterized protein
TrEMBLM8BV111e-106M8BV11_AEGTA; Transcription factor bHLH35
STRINGEMT067471e-106(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.24e-42bHLH family protein