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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000178G0330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bHLH | ||||||||
Protein Properties | Length: 237aa MW: 25891.1 Da PI: 7.6447 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.7 | 4.9e-09 | 75 | 123 | 4 | 46 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC.........TTS-STCHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkas......kapskKlsKaeiLek 46 +h+ +Er RR++iN ++e L+el+P +s ++ + ++ L++ PH01000178G0330 75 SHSLAERARREKINARMELLKELVPGCSkvsgttLVLDEIINHVQSLQR 123 8*************************96555555444555555555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.03E-9 | 69 | 126 | No hit | No description |
SuperFamily | SSF47459 | 7.07E-15 | 69 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.056 | 71 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-14 | 72 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-6 | 75 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-6 | 77 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MAMTGEGGRR RGGEEEEVGL AQRKKPRVEE EGKAAKKGKT AAGGEEKAGG GGDGEEEEKP 60 AYVHVRVRRG QATDSHSLAE RARREKINAR MELLKELVPG CSKVSGTTLV LDEIINHVQS 120 LQRQVEYLSM RLAAVNPRVD FGGLGNFLTT ECGRITGLNC KNGMDLEQVT WPEMGIHGAR 180 HLMQLQQQFW HGDLAHPHQP PSQWEKRGNA HPPVFGNSSS SLFGYDLASS ECLVNK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000178G0330 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095332 | 0.0 | FP095332.1 Phyllostachys edulis cDNA clone: bphyem123o05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010227502.2 | 1e-127 | transcription factor bHLH48 | ||||
Swissprot | Q8VZ02 | 5e-47 | BH048_ARATH; Transcription factor bHLH48 | ||||
TrEMBL | I1GXA9 | 1e-126 | I1GXA9_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G35990.1 | 1e-126 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6932 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57800.2 | 2e-50 | bHLH family protein |
Publications ? help Back to Top | |||
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