PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000174G0320

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bZIP

Protein Properties

Length: 363aa MW: 38336.4 Da PI: 5.0233

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000174G0320	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.8	2.1e-12	173	227	4	58
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 + +rrkq+NRe+ArrsR RK a + eLe v++ aeN++L +l ++++ + PH01000174G0320 173 QRLQRRKQSNRESARRSRSRKTAHLNELEAQVAQSRAENSSLLRRLADVNQKYNA 227 6789***************************************999988888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.5E-17	170	234	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.783	172	226	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.2E-9	172	226	No hit	No description
Pfam	PF00170	1.0E-8	172	225	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.79E-9	174	224	No hit	No description
Pfam	PF12498	3.5E-47	241	357	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MNRCPSEWYF QKFLEEAVLD SPGPNPSPRP DASGRRGGGE AADVKQPAST ATSAVVDPVE 60 YNAMLKQKLD KDLAAVAMWR ASGAMPPERS AAGPTLPNAD VSHLGTLSSI GGNAIPVQNE 120 LGGGPSGGSG PQLVQNTDVL VKQATSSSSR EQSDDDDMEG EAETTGNAKP AEQRLQRRKQ 180 SNRESARRSR SRKTAHLNEL EAQVAQSRAE NSSLLRRLAD VNQKYNAAAV DNRVLKADVE 240 TLRAKVKMAE DSVKRVTGMN ALFPAVSDIS SLSMTFNGSP SDATSAVPIQ DDPNNYFAMT 300 SEVGGNNGYM PEIAPSAQED DDFVNEALAA AKMGGTASLQ RVSSLEHLQK RMCGGPTSSG 360 ST*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MNRCPSEWYF QKFLEEAVLD SPGPNPSPRP DASGRRGGGE AADVKQPAST ATSAVVDPVE  60
YNAMLKQKLD KDLAAVAMWR ASGAMPPERS AAGPTLPNAD VSHLGTLSSI GGNAIPVQNE  120
LGGGPSGGSG PQLVQNTDVL VKQATSSSSR EQSDDDDMEG EAETTGNAKP AEQRLQRRKQ  180
SNRESARRSR SRKTAHLNEL EAQVAQSRAE NSSLLRRLAD VNQKYNAAAV DNRVLKADVE  240
TLRAKVKMAE DSVKRVTGMN ALFPAVSDIS SLSMTFNGSP SDATSAVPIQ DDPNNYFAMT  300
SEVGGNNGYM PEIAPSAQED DDFVNEALAA AKMGGTASLQ RVSSLEHLQK RMCGGPTSSG  360
ST*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:11572990, ECO:0000269\|PubMed:9049271}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000174G0320

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631619.1	0.0	bZIP transcription factor RISBZ2-like
Swissprot	Q7X9A8	0.0	RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBL	A0A0E0KK66	0.0	A0A0E0KK66_ORYPU; Uncharacterized protein
STRING	OPUNC03G34450.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3488	38	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	8e-39	bZIP family protein

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Yang D,Wu L,Hwang YS,Chen L,Huang N Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter. Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43 [PMID:11572990] Cheng S,Wang Z,Hong M Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene. Sci. China, C, Life Sci., 2002. 45(4): p. 352-60 [PMID:18759022]