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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PH01000171G1160 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family |
MYB_related |
Protein Properties |
Length: 308aa MW: 33479.2 Da PI: 6.8836 |
Description |
MYB_related family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PH01000171G1160 | genome | ICBR | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 40.5 | 6.3e-13 | 86 | 130 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+WT+eE+ +++ + + lG+g+W+ I+r + Rt+ q+ s+ qky
PH01000171G1160 86 AWTEEEHRRFLLGLQNLGKGDWRGISRNFVVSRTPTQVASHAQKY 130
7*******************************************9 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0000122 | Biological Process | negative regulation of transcription from RNA polymerase II promoter |
GO:0009651 | Biological Process | response to salt stress |
GO:0009723 | Biological Process | response to ethylene |
GO:0009737 | Biological Process | response to abscisic acid |
GO:0009739 | Biological Process | response to gibberellin |
GO:0009751 | Biological Process | response to salicylic acid |
GO:0009753 | Biological Process | response to jasmonic acid |
GO:0030307 | Biological Process | positive regulation of cell growth |
GO:0046686 | Biological Process | response to cadmium ion |
GO:0048366 | Biological Process | leaf development |
GO:2000469 | Biological Process | negative regulation of peroxidase activity |
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding |
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
Protein Sequence Length: 308 aa
Download sequence Send
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MTRRCSHCSQ NGHNSRTCPN RGVKIFGVRL TDGSIRKSAS MGNLSLLSAG STSGGASPAD 60 GPDGYASDDL VQGSSSASRE RKKGVAWTEE EHRRFLLGLQ NLGKGDWRGI SRNFVVSRTP 120 TQVASHAQKY FIRQANVSRR KRRSSLFDMV PDESMDLPPL PGSQESEAQV LNQPPLPPPM 180 EEEVESMESD TSANAESSLA SAIMPENLQS SYPVIVPAYF SPFLQFSVPF WQNQKDGDDL 240 GQETHEIVKP VPVHSKSPIN VDELVGMSKL SIGESNQETL STSLSLNLVG GQNRQSAFHA 300 NPPTRAQA
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Functional Description ? help
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Source |
Description |
UniProt | Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | FP094044 | 0.0 | FP094044.1 Phyllostachys edulis cDNA clone: bphyem209e15, full insert sequence. |
Publications
? help Back to Top |
- Rice Chromosome 10 Sequencing Consortium
In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] - Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Su CF, et al.
A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]
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