PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000170G0120
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 268aa    MW: 28824.9 Da    PI: 5.026
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000170G0120genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.3e-09164217754
                      HHHHHHHHHHHHHHHHHHCTSCC.C........TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.as.....kapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk +        +   ++  +iL  +++Y+k+L
  PH01000170G0120 164 MAERRRRKRLNDRLSMLRSIVPKiSKnareiLLTLMQMDRTSILGDTIDYVKEL 217
                      89*********************6659999988888899999********9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.507157217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-12161230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-9163223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.15E-4164217No hitNo description
Gene3DG3DSA:4.10.280.106.0E-13164222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-7164217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDEEPFLEEL MALQRGSTPA DLWHAFPSGG LIIGDLFLGG DARSMEVSPL QALPVPLPPP  60
PPPPPPLHEE ISFDCLSEVC NPYKNGAVRT DDPQMAIDHS VHEAAVAVVE ERCEVRHGGG  120
DGSPMFVFGG VGAASSENAM NGAMMSGVQP RSRLIPGAPS KNLMAERRRR KRLNDRLSML  180
RSIVPKISKN AREILLTLMQ MDRTSILGDT IDYVKELMDR IKTIQDEVGA SSPEDLNTLS  240
TLTITAASSS AAGKETTLTR NSTRVSP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165172ERRRRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000170G0120
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985797.12e-60transcription factor bHLH61
TrEMBLK4AC635e-59K4AC63_SETIT; Uncharacterized protein
STRINGSi036470m8e-60(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.22e-22beta HLH protein 93