PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000165G1370

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bHLH

Protein Properties

Length: 354aa MW: 37291.6 Da PI: 6.1476

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000165G1370	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.7	8.7e-08	256	296	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P Kl+ a++L +Av Y+k L PH01000165G1370 256 ARLRRERVSERLRALQRLVPGG-----SKLDTASMLDEAVSYLKFL 296 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.13E-11	238	301	No hit	No description
PROSITE profile	PS50888	15.123	247	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-13	253	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-12	253	302	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.7E-10	253	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-5	257	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MDAFGWSTQS PAAPCPPSCP SDDALLAAFL SASFELHSDN GGNDTVSSDA YGLDLSSSQL 60 SLVRCQDGMT LPTDASMAFM DSVDMLPAIT GAHDGLLDRF WFPSIPEEPA RTAVSNTAFC 120 GYSSTTGGGN ISSGESNTYG GHDTEVASPC AVSQPVPPAQ TTVPPSKRKL ADKYPAAGAS 180 ASAATTTSIT FGRISGQPGP LGRGYEPDTE AIEQVKEMIY RAAAMRPVNL GAAEPRPEKP 240 RRKNVRISSD PQTVAARLRR ERVSERLRAL QRLVPGGSKL DTASMLDEAV SYLKFLKSQL 300 EALETLGSGS GNNGRLIQHY MGRNPSSASN GTALAFGRDG ITGYVKSNRY MQL*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MDAFGWSTQS PAAPCPPSCP SDDALLAAFL SASFELHSDN GGNDTVSSDA YGLDLSSSQL  60
SLVRCQDGMT LPTDASMAFM DSVDMLPAIT GAHDGLLDRF WFPSIPEEPA RTAVSNTAFC  120
GYSSTTGGGN ISSGESNTYG GHDTEVASPC AVSQPVPPAQ TTVPPSKRKL ADKYPAAGAS  180
ASAATTTSIT FGRISGQPGP LGRGYEPDTE AIEQVKEMIY RAAAMRPVNL GAAEPRPEKP  240
RRKNVRISSD PQTVAARLRR ERVSERLRAL QRLVPGGSKL DTASMLDEAV SYLKFLKSQL  300
EALETLGSGS GNNGRLIQHY MGRNPSSASN GTALAFGRDG ITGYVKSNRY MQL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	237	243	EKPRRKN
2	238	243	KPRRKN
3	256	261	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269\|PubMed:21549224}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000165G1370

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK357521	1e-79	AK357521.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1055H14.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020196054.1	1e-111	transcription factor bHLH87-like
Refseq	XP_020196055.1	1e-111	transcription factor bHLH87-like
Swissprot	A0A0P0WQ90	1e-109	LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBL	A0A0E0L557	1e-124	A0A0E0L557_ORYPU; Uncharacterized protein
STRING	OPUNC05G21740.1	1e-124	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1546	37	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-31	bHLH family protein

Publications ? help Back to Top
Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]