PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000132G1210

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Protein Properties

Length: 364aa MW: 41449.8 Da PI: 7.5442

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000132G1210	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	63.7	2.9e-20	34	115	10	98
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++++ l++p +fa++++g s ++ l+++sg++W++ + + +++vl++GW+eFv+a+ ++egD ++Fk++g s+f v +f+ PH01000132G1210 34 DFTES-LSIPDRFANNFNGH--ISEDVNLKSPSGKTWSIGV--ANDTDGVVLRSGWNEFVSAHSIEEGDYLLFKYSGVSSF--DVLMFD 115 44444.9*****888666..6779***********..*******************************99999..666665 PP
2	B3	43.2	6.8e-14	256	355	1	99
EEEE-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 1 ffkvltpsdvlks..grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 f++v+ ps+v + + + ++ +fa ++ g +k+++l+ ++ +W v + r + r + ++GW +Fv++ngL + D+++F+l++ ++ PH01000132G1210 256 FVQVMHPSHVRGKssSVVGVSSEFAGKYLGT--IGKEIILQRaSRRGTWHVHYASRDYC-RGLCGRGWCDFVRDNGLVSHDVCLFELIKGkRRP 346 66777777776553366678999999555..67899999955569**755555.55899*********************776888 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 ++ v+v+r+ PH01000132G1210 347 TMAVHVLRR 355 899999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.7E-25	21	119	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.06E-25	22	122	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	15.072	24	117	IPR003340	B3 DNA binding domain
CDD	cd10017	1.71E-19	25	115	No hit	No description
SMART	SM01019	9.0E-12	27	117	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.4E-17	28	111	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.6E-19	249	354	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.73E-18	249	354	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.04E-11	254	354	No hit	No description
PROSITE profile	PS50863	9.798	256	356	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.2E-11	256	355	IPR003340	B3 DNA binding domain
SMART	SM01019	1.3E-5	256	356	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005773	Cellular Component	vacuole
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MGKNCKICME WQKHCYWSHM ADENKHFFKL MVGDFTESLS IPDRFANNFN GHISEDVNLK 60 SPSGKTWSIG VANDTDGVVL RSGWNEFVSA HSIEEGDYLL FKYSGVSSFD VLMFDPTGCE 120 KTSPHFVKNH GYEILENSAG VEGVRCGCRN FERTQDRTPQ SPPINNDNAH LEMTLHRSTG 180 KSISRACKRD LYYDIEQAHC EVKDDEDLEL DDRDAPTKAG YYFCKNGPVS EYHLTEQDKE 240 EISSIRVPLQ PRNPVFVQVM HPSHVRGKSS SVVGVSSEFA GKYLGTIGKE IILQRASRRG 300 TWHVHYASRD YCRGLCGRGW CDFVRDNGLV SHDVCLFELI KGKRRPTMAV HVLRRLRGRF 360 ALLR

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MGKNCKICME WQKHCYWSHM ADENKHFFKL MVGDFTESLS IPDRFANNFN GHISEDVNLK  60
SPSGKTWSIG VANDTDGVVL RSGWNEFVSA HSIEEGDYLL FKYSGVSSFD VLMFDPTGCE  120
KTSPHFVKNH GYEILENSAG VEGVRCGCRN FERTQDRTPQ SPPINNDNAH LEMTLHRSTG  180
KSISRACKRD LYYDIEQAHC EVKDDEDLEL DDRDAPTKAG YYFCKNGPVS EYHLTEQDKE  240
EISSIRVPLQ PRNPVFVQVM HPSHVRGKSS SVVGVSSEFA GKYLGTIGKE IILQRASRRG  300
TWHVHYASRD YCRGLCGRGW CDFVRDNGLV SHDVCLFELI KGKRRPTMAV HVLRRLRGRF  360
ALLR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00468	DAP	Transfer from AT4G33280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000132G1210

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP092813	0.0	FP092813.1 Phyllostachys edulis cDNA clone: bphyem212f21, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982409.2	1e-179	B3 domain-containing protein Os03g0622200
Swissprot	Q10GM3	1e-146	Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBL	A0A1E5WJT8	0.0	A0A1E5WJT8_9POAL; B3 domain-containing protein
STRING	Pavir.Ib03973.1.p	1e-175	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP562	34	179

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	1e-29	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]