PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

HD-ZIP

Protein Properties

Length: 306aa MW: 33389.6 Da PI: 4.4846

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000129G1060	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.8	4.4e-19	63	115	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ eq+++Le+ Fe +++++ ++++++A+ lgL+ rqV vWFqNrRa++k PH01000129G1060 63 KRRLALEQVRALERSFETDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWK 115 4467789*********************************************9 PP
2	HD-ZIP_I/II	128.4	2.9e-41	61	153	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqv++LE+sFe+++kL+p+rK+++ar+LglqprqvavWFqnrRAR+ktkqlE+d++aL++++dal+++ ++L++++++L++e++e PH01000129G1060 61 EKKRRLALEQVRALERSFETDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLERDFSALRARHDALRADCDALRRDKDALAAEIRE 153 69**************************************************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.98E-19	54	119	IPR009057	Homeodomain-like
SMART	SM00389	2.6E-19	60	121	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.584	61	117	IPR001356	Homeobox domain
CDD	cd00086	3.39E-18	62	118	No hit	No description
Pfam	PF00046	2.6E-16	63	115	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.5E-20	69	116	IPR009057	Homeodomain-like
PRINTS	PR00031	2.7E-5	88	97	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	92	115	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.7E-5	97	113	IPR000047	Helix-turn-helix motif
Pfam	PF02183	5.2E-16	117	158	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MKRPTSSQES SESGEKLALA EKDSLLAPYM EQYEPELEVD DDDDELAGGR GVLSSSCGLG 60 EKKRRLALEQ VRALERSFET DNKLDPDRKA RIARDLGLQP RQVAVWFQNR RARWKTKQLE 120 RDFSALRARH DALRADCDAL RRDKDALAAE IRELTEKLSK PETEVKVEAG NDAAEERQAT 180 LGASAAAIYK DGSSDSDSSV VFNDEASPYS SAVLEQPGFM GFGASFLDSS AATMGCSSLP 240 MLETKFHGTY SYNSYKSSGY GFTEEWLAGS DAIGNDGAGF FSEEHASNLN FGWCGSGTEG 300 FDLHG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	117	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000129G1060

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190062.1	1e-143	homeobox-leucine zipper protein HOX13-like
Swissprot	Q10QP3	1e-118	HOX13_ORYSJ; Homeobox-leucine zipper protein HOX13
TrEMBL	A0A453IYQ5	1e-141	A0A453IYQ5_AEGTS; Uncharacterized protein
STRING	Traes_4BL_ECD20BE67.1	1e-142	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4283	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65310.2	3e-31	homeobox protein 5

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]