PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000113G0300

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Dof

Protein Properties

Length: 433aa MW: 46372.8 Da PI: 8.1106

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000113G0300	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.3e-39	99	159	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k++s PH01000113G0300 99 PDKILPCPRCSSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSAS 159 7899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-27	95	148	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.5E-32	101	157	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.761	103	157	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	105	141	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MGACRAAAGG GDCLIKLFGK TINPVPDAGD GDVDKDLQHS GSSTTEPKVQ ENIPQDSTGS 60 PPQPEVADTE DSSAVKNSSE DRQQQQGDTA NQKEKLKKPD KILPCPRCSS MDTKFCYYNN 120 YNINQPRHFC KNCQRYWTAG GAMRNVPVGA GRRKSKSASA ASHFLQRVRA ALPDDPLYTP 180 VKTNGTVLSF SSNTSTLDLT EQMKHLKEKQ IPITQIKNTD DPSIRSCAEG LAKGEDSNQV 240 NLKEKVTADK SANVAQHPCM NGGTMWPFSC APPPAYYTSS IAIPFYPAAA AYWGCMVPGA 300 WNTPWPPQSQ SQSGSSPSAA SPVSTMSNCF KSRKHPRDGD EEGDAKGNGK VWVPKTVRID 360 DADEVARSSI WSLIGIKGDK VGTDDGRGCK LAGVFEPKGE AKTATHTVIN SLPFLQGNPA 420 ALSRAVTFQE GS*

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MGACRAAAGG GDCLIKLFGK TINPVPDAGD GDVDKDLQHS GSSTTEPKVQ ENIPQDSTGS  60
PPQPEVADTE DSSAVKNSSE DRQQQQGDTA NQKEKLKKPD KILPCPRCSS MDTKFCYYNN  120
YNINQPRHFC KNCQRYWTAG GAMRNVPVGA GRRKSKSASA ASHFLQRVRA ALPDDPLYTP  180
VKTNGTVLSF SSNTSTLDLT EQMKHLKEKQ IPITQIKNTD DPSIRSCAEG LAKGEDSNQV  240
NLKEKVTADK SANVAQHPCM NGGTMWPFSC APPPAYYTSS IAIPFYPAAA AYWGCMVPGA  300
WNTPWPPQSQ SQSGSSPSAA SPVSTMSNCF KSRKHPRDGD EEGDAKGNGK VWVPKTVRID  360
DADEVARSSI WSLIGIKGDK VGTDDGRGCK LAGVFEPKGE AKTATHTVIN SLPFLQGNPA  420
ALSRAVTFQE GS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000113G0300

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003558722.1	0.0	cyclic dof factor 1
TrEMBL	A0A1D8F0I1	0.0	A0A1D8F0I1_9POAL; Dof protein
STRING	BRADI1G73710.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	7e-50	cycling DOF factor 2