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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000106G0210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | YABBY | ||||||||
Protein Properties | Length: 192aa MW: 21355.4 Da PI: 8.7225 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 57.1 | 7.7e-18 | 1 | 46 | 1 | 46 |
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsll 46 +d++s se++Cyv+C++Cnt+lav vP + l+ +vtv+CGhC +l PH01000106G0210 1 MDLVSPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLS 46 578999************************************9984 PP | |||||||
2 | YABBY | 91.6 | 2e-28 | 85 | 145 | 102 | 162 |
YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162 s +++ +pr+p v++PPek+ r Psaynrf++eeiqrika+ Pdi hreafs+aaknWa PH01000106G0210 85 SPTSSDASPRAPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWAK 145 556677899***************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.5E-45 | 6 | 146 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.09E-8 | 91 | 147 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.8E-5 | 100 | 147 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010254 | Biological Process | nectary development | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0048479 | Biological Process | style development |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MDLVSPSEHL CYVRCTYCNT VLAVGVPCKR LMDTVTVKCG HCNNLSFLSP RPPMVQPLSP 60 TDHPMGPFQG PCNDCRRNQP LPLASPTSSD ASPRAPFVVK PPEKKHRLPS AYNRFMREEI 120 QRIKAAKPDI PHREAFSMAA KNWAKCDPRC SSTVSTSNSN QESRVVPGPQ ERSNEQVIES 180 FDIFKQMERS G* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00220 | DAP | Transfer from AT1G69180 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000106G0210 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB106553 | 0.0 | AB106553.1 Oryza sativa Japonica Group DROOPING LEAF mRNA for DL protein, complete cds. | |||
GenBank | AY494713 | 0.0 | AY494713.1 Oryza sativa (japonica cultivar-group) drooping leaf (DL) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012704688.1 | 1e-124 | protein DROOPING LEAF isoform X2 | ||||
Swissprot | Q76EJ0 | 1e-123 | YABDL_ORYSJ; Protein DROOPING LEAF | ||||
TrEMBL | A0A3L6TQ50 | 1e-124 | A0A3L6TQ50_PANMI; Protein DROOPING LEAF isoform X1 | ||||
STRING | Pavir.Ib00755.1.p | 1e-126 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5951 | 36 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69180.1 | 3e-55 | YABBY family protein |