PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000093G1390

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

C3H

Protein Properties

Length: 494aa MW: 56482.9 Da PI: 9.9194

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000093G1390	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.2	1.2e-07	11	34	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC ++r G+C++ d+C+FaHg PH01000093G1390 11 YKTKLCALWQR-GHCNR-DTCSFAHG 34 9********.*.*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	4.7E-12	5	41	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.14E-5	9	40	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.183	10	36	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-5	11	34	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MLGPPRRGPA YKTKLCALWQ RGHCNRDTCS FAHGNGELRR LPTSRSSFPH NAGRRDYRSS 60 DFRDRVDRRF SPRRRHSPGR DSRGHRALYD RRPTSRERES SYSRSPSRKS ERRHDKKTDD 120 GETNSSRSLS VSDNKDDRKK DKFSSGDEKE DHEKQLKQIR LDIEVLREDK SHLEIILDEK 180 IDEMRKISSK VNDLDQQLRR EKEECHRMTS KMKKFIKAHA RFLKAQEELK RSQARFERLG 240 DLLASDILKR GANEEVSSVN VDEDPNGHYE RSPNAAATKK RSILYSTSEE AKAVKKRRER 300 YYDTITRSEK YRSEGAVTDF DKTSKGTEAT KSLYLKKKLW EDEKNKLGNV SSANVFADKV 360 KDSPVKHVLP STGMAAHAVD DLNEAVELED IHEPTDASLE NDADDKTRSP VMPPQPPPPV 420 VQNAYVQAPW KAQSNWASWG ECEIERANLK PARGGEHGGY LDLGGGGPMR EIVGDESGRC 480 REARIGTEKR RKE*

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MLGPPRRGPA YKTKLCALWQ RGHCNRDTCS FAHGNGELRR LPTSRSSFPH NAGRRDYRSS  60
DFRDRVDRRF SPRRRHSPGR DSRGHRALYD RRPTSRERES SYSRSPSRKS ERRHDKKTDD  120
GETNSSRSLS VSDNKDDRKK DKFSSGDEKE DHEKQLKQIR LDIEVLREDK SHLEIILDEK  180
IDEMRKISSK VNDLDQQLRR EKEECHRMTS KMKKFIKAHA RFLKAQEELK RSQARFERLG  240
DLLASDILKR GANEEVSSVN VDEDPNGHYE RSPNAAATKK RSILYSTSEE AKAVKKRRER  300
YYDTITRSEK YRSEGAVTDF DKTSKGTEAT KSLYLKKKLW EDEKNKLGNV SSANVFADKV  360
KDSPVKHVLP STGMAAHAVD DLNEAVELED IHEPTDASLE NDADDKTRSP VMPPQPPPPV  420
VQNAYVQAPW KAQSNWASWG ECEIERANLK PARGGEHGGY LDLGGGGPMR EIVGDESGRC  480
REARIGTEKR RKE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	278	297	KKRSILYSTSEEAKAVKKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000093G1390

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015689366.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 13
Swissprot	Q6H7U2	0.0	C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBL	A0A0D3F112	0.0	A0A0D3F112_9ORYZ; Uncharacterized protein
STRING	OS02T0161200-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3882	29	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21810.1	2e-21	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]