PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000089G0980

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bHLH

Protein Properties

Length: 311aa MW: 32398 Da PI: 8.657

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000089G0980	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.6	7.1e-11	245	290	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k +++L +Ave+Ik Lq PH01000089G0980 245 SIAERERRTRISEKLRKLQELVPNM----DKQTGTSDMLDLAVEHIKGLQ 290 689*******************7....5778889***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.853	239	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-15	242	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.37E-11	243	294	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.9E-14	244	302	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-8	245	290	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.9E-12	245	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MRRFLPAGGG GEPSSSSSPG PHGERAGSKA AAGLRYGGGD ISLGRGHDLH SQFHSVGGVG 60 EAEMKDGVDT LARHSSSPAR FFSNLMVGNG FPGSKAGAAG GGGAEVHHHH PSMASNANSR 120 KMKSQLSFTA GPQAGASPHL SQISEDGAGL FPGADRAAGH SGENAVPRSS FSAAAGGGGG 180 GGFSIVGPWD ESRDLVATLG GYEFIGMSSS SALEMAGMDR YMQLQQDQVP FKVRAKRGCA 240 THPRSIAERE RRTRISEKLR KLQELVPNMD KQTGTSDMLD LAVEHIKGLQ SQLQTLKHEQ 300 EKCTCCSKGF D

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000089G0980

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP099912	0.0	FP099912.1 Phyllostachys edulis cDNA clone: bphyem110m02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015625725.1	1e-116	transcription factor bHLH128 isoform X1
Swissprot	Q8H102	1e-52	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A0E0K237	1e-122	A0A0E0K237_ORYPU; Uncharacterized protein
STRING	OPUNC02G21170.1	1e-123	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11531	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	3e-48	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]