PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

PH01000073G0920

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

LBD

Protein Properties

Length: 215aa MW: 22717.8 Da PI: 7.9417

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000073G0920	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.8	2.2e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C++ Cvl+p++ +++q +++ +v+k+FG++ ++++l+a+pe +r+++++sl+yeA r+ +Pv+Gavg++++++++l+q PH01000073G0920 2 SCNGCRVLRKGCSEACVLRPCLqwievAEAQGHATVFVAKFFGRAGLMSFLTAVPEPQRPAVFQSLLYEAAGRTINPVSGAVGLLWAGSWHLCQ 95 6*******************9999888899********************************************************** PP DUF260 90 lkaelall 97 +++e++l+ PH01000073G0920 96 AAVETVLR 103 998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.061	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.1E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MSCNGCRVLR KGCSEACVLR PCLQWIEVAE AQGHATVFVA KFFGRAGLMS FLTAVPEPQR 60 PAVFQSLLYE AAGRTINPVS GAVGLLWAGS WHLCQAAVET VLRGGGIGPL PELEGGVPAD 120 DTGGGRDLFA SSARRAVGCS MAKQVTTRKP WIPEAAAHGE EPSCDLGLWF SPGSPPAAGE 180 RRVHELRGVR DDDRRREGAR ASESFCLSSS VRAN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000073G0920

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069813	1e-139	AK069813.1 Oryza sativa Japonica Group cDNA clone:J023030F23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958181.1	1e-92	LOB domain-containing protein 37
Swissprot	Q9FN11	2e-65	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	K3ZWM9	3e-91	K3ZWM9_SETIT; Uncharacterized protein
STRING	Si031011m	5e-92	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	2e-62	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]