 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PH01000072G0530 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
| Family |
LBD |
| Protein Properties |
Length: 237aa MW: 25694.4 Da PI: 9.5519 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PH01000072G0530 | genome | ICBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 70.8 | 2.8e-22 | 108 | 182 | 27 | 101 |
DUF260 27 pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101
++++a+vh+lFGasnv kll+++p r+d++++++yeA+ar+ dPvyG+vg+il+lq+q++ l+ +l++l+++l
PH01000072G0530 108 AAQLAAVHRLFGASNVAKLLSRVPVALRRDTARTVCYEAQARIADPVYGSVGTILALQHQVALLQGQLSVLRSQL 182
67899****************************************************************999875 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 237 aa
Download sequence Send
to blast |
MAADPARRCG AAARLRVVRH LKKGWGLHAD EALRRGQFVC EYTGEFLTTE EAQRRQRLYD 60
ELASVATLQE ARRCRDDAAS WGGAGGGSVV RGLQVPAAAV RAGVRVRAAQ LAAVHRLFGA 120
SNVAKLLSRV PVALRRDTAR TVCYEAQARI ADPVYGSVGT ILALQHQVAL LQGQLSVLRS 180
QLFNCRLALA STHPDIEHFV VLQPAYAVAL AASQMVNYND LPQAVDFMDV EPQLRD*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK242468 | 8e-71 | AK242468.1 Oryza sativa Japonica Group cDNA, clone: J080302F02, full insert sequence. |
