PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000072G0530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | LBD | ||||||||
Protein Properties | Length: 237aa MW: 25694.4 Da PI: 9.5519 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 70.8 | 2.8e-22 | 108 | 182 | 27 | 101 |
DUF260 27 pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 ++++a+vh+lFGasnv kll+++p r+d++++++yeA+ar+ dPvyG+vg+il+lq+q++ l+ +l++l+++l PH01000072G0530 108 AAQLAAVHRLFGASNVAKLLSRVPVALRRDTARTVCYEAQARIADPVYGSVGTILALQHQVALLQGQLSVLRSQL 182 67899****************************************************************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF82199 | 4.58E-14 | 10 | 63 | No hit | No description |
Gene3D | G3DSA:2.170.270.10 | 2.4E-14 | 11 | 63 | No hit | No description |
PROSITE profile | PS50891 | 11.1 | 62 | 182 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.7E-24 | 107 | 179 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MAADPARRCG AAARLRVVRH LKKGWGLHAD EALRRGQFVC EYTGEFLTTE EAQRRQRLYD 60 ELASVATLQE ARRCRDDAAS WGGAGGGSVV RGLQVPAAAV RAGVRVRAAQ LAAVHRLFGA 120 SNVAKLLSRV PVALRRDTAR TVCYEAQARI ADPVYGSVGT ILALQHQVAL LQGQLSVLRS 180 QLFNCRLALA STHPDIEHFV VLQPAYAVAL AASQMVNYND LPQAVDFMDV EPQLRD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-16 | 110 | 183 | 39 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-16 | 110 | 183 | 39 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000072G0530 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242468 | 8e-71 | AK242468.1 Oryza sativa Japonica Group cDNA, clone: J080302F02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020151201.1 | 9e-72 | LOB domain-containing protein 20-like | ||||
TrEMBL | A0A3B6GWE7 | 7e-71 | A0A3B6GWE7_WHEAT; Uncharacterized protein | ||||
STRING | BRADI2G51310.1 | 5e-70 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14085 | 25 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 4e-25 | LOB domain-containing protein 20 |