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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000069G1480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bHLH | ||||||||
Protein Properties | Length: 119aa MW: 13659.6 Da PI: 11.2881 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.3 | 0.00032 | 95 | 117 | 6 | 28 |
HHHHHHHHHHHHHHHHHHHCTSC CS HLH 6 nerErrRRdriNsafeeLrellP 28 + rErrR++r +++ +Lr lP PH01000069G1480 95 KLRERRRVNRFSEWLPQLRHRLP 117 679****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF81383 | 1.7E-11 | 20 | 70 | IPR001810 | F-box domain |
Gene3D | G3DSA:1.20.1280.50 | 4.0E-8 | 27 | 68 | No hit | No description |
Pfam | PF00646 | 6.0E-6 | 32 | 76 | IPR001810 | F-box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MALEFDGDGS AHRRRADEGR EQGESSAVKV DSISALPEEL RLHILTFLPL KFAIRTAALS 60 KAWRGLWERR WPDPSSLHIN LVPGDSSEQL LASLKLRERR RVNRFSEWLP QLRHRLPR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000069G1480 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP100026 | 1e-132 | FP100026.1 Phyllostachys edulis cDNA clone: bphylf061f02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010237537.1 | 5e-23 | uncharacterized protein LOC100841457 | ||||
TrEMBL | I1IK98 | 1e-21 | I1IK98_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G13350.1 | 2e-22 | (Brachypodium distachyon) |